PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010557970.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

NF-YA

Protein Properties

Length: 279aa MW: 30834.7 Da PI: 9.8153

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010557970.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	90.6	2e-28	129	187	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrk.pylheSRhkhAlrRpRgsgGrF 58 d p+YVNaKQy++I++RRq+Rak+ +k+++ksrk py+h SRh hA+rRpRg+gGrF XP_010557970.1 129 DGPIYVNAKQYHGIIRRRQSRAKAVLYNKVTNKSRKqPYMHYSRHLHAMRRPRGTGGRF 187 57*************************999887549******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	6.8E-31	127	190	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	34.739	128	190	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	5.5E-24	131	187	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.1E-21	131	153	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.1E-21	164	187	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009567	Biological Process	double fertilization forming a zygote and endosperm
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MAMQTVYFKE REGILGNNPK GQILSPPQTT WWNVLGSQPL IRHGSTVGET EQGMDKLNAA 60 TQFTFSADDG QKPQGALTTQ SACFEFGFAQ PTILAKYPYV EQYYGVVSAY ESQMPQGRVM 120 LPMNMATEDG PIYVNAKQYH GIIRRRQSRA KAVLYNKVTN KSRKQPYMHY SRHLHAMRRP 180 RGTGGRFLNT KNPNKGERGG GSDEGKQPQP QPQPSNSQNS EVIHPENGTM NSSREVNGSN 240 FSGSEVTSMD FFLGSGMVIP SKWIAAAAAM DNGCCNLKV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_A	3e-16	129	188	2	60	HAPB protein
4g92_A	3e-16	129	188	2	60	HAPB protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010557970.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010557970.1	0.0	PREDICTED: nuclear transcription factor Y subunit A-2-like isoform X1
Refseq	XP_010557971.1	0.0	PREDICTED: nuclear transcription factor Y subunit A-2-like isoform X1
Refseq	XP_010557972.1	0.0	PREDICTED: nuclear transcription factor Y subunit A-2-like isoform X1
Swissprot	Q9M9X4	1e-103	NFYA2_ARATH; Nuclear transcription factor Y subunit A-2
TrEMBL	V4LDW7	1e-101	V4LDW7_EUTSA; Uncharacterized protein
STRING	XP_010557970.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3008	27	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G05690.1	2e-95	nuclear factor Y, subunit A2

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722] Nasim Z,Fahim M,Ahn JH Possible Role of MADS AFFECTING FLOWERING 3 and B-BOX DOMAIN PROTEIN 19 in Flowering Time Regulation of Arabidopsis Mutants with Defects in Nonsense-Mediated mRNA Decay. Front Plant Sci, 2017. 8: p. 191 [PMID:28261246] Zhang M,Hu X,Zhu M,Xu M,Wang L Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis. Sci Rep, 2017. 7(1): p. 1395 [PMID:28469131]