PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010557944.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | C3H | ||||||||
Protein Properties | Length: 244aa MW: 25553.6 Da PI: 9.9214 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20.5 | 8.4e-07 | 37 | 60 | 2 | 25 |
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k ++C f+ t C++G++C+F H XP_010557944.1 37 KSKPCTKFFSTSGCPFGENCHFLH 60 7789******************** PP | |||||||
2 | zf-CCCH | 37.8 | 3.3e-12 | 210 | 235 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ykt+lC +f++ G C +GdrC+FaHg+ XP_010557944.1 210 YKTKLCERFSK-GNCTFGDRCHFAHGE 235 9**********.*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 12.84 | 35 | 63 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.21 | 35 | 62 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.49E-6 | 36 | 62 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.2E-5 | 37 | 60 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.8E-8 | 37 | 60 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF54791 | 8.62E-16 | 100 | 180 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 3.5E-12 | 110 | 180 | IPR004087 | K Homology domain |
PROSITE profile | PS50084 | 14.697 | 111 | 175 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:3.30.1370.10 | 1.9E-16 | 111 | 179 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 3.66E-14 | 113 | 175 | No hit | No description |
Pfam | PF00013 | 2.7E-12 | 113 | 177 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:4.10.1000.10 | 4.5E-17 | 204 | 241 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 17.234 | 209 | 236 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.85E-9 | 209 | 239 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.3E-8 | 209 | 235 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.8E-9 | 210 | 235 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MDARKRGRPD AGAYNSNGGF KRSKQEMESY STGLGSKSKP CTKFFSTSGC PFGENCHFLH 60 YVPGGYNVVS QMTNLGPPVP QVSRNMPGSG PGRYSGRTEP GPGPVSSFGA SATAKISVDA 120 SLAGAIIGKG GINSKQICRQ TGAKLSIQDH ERDPNLKNIE LEGTFEQINE ASAMVRELIV 180 RVGSAARRPS GGGGGGGGGS EGKPHPGSNY KTKLCERFSK GNCTFGDRCH FAHGEAELRK 240 PGVA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 189 | 199 | SGGGGGGGGGS |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00113 | ampDAP | Transfer from AT3G12130 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010557944.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010557941.1 | 1e-179 | PREDICTED: zinc finger CCCH domain-containing protein 36-like isoform X1 | ||||
Refseq | XP_010557942.1 | 1e-179 | PREDICTED: zinc finger CCCH domain-containing protein 36-like isoform X1 | ||||
Refseq | XP_010557944.1 | 1e-179 | PREDICTED: zinc finger CCCH domain-containing protein 36-like isoform X1 | ||||
Refseq | XP_010557945.1 | 1e-179 | PREDICTED: zinc finger CCCH domain-containing protein 36-like isoform X1 | ||||
Swissprot | Q9C7C3 | 1e-138 | C3H36_ARATH; Zinc finger CCCH domain-containing protein 36 | ||||
TrEMBL | E4MYD4 | 1e-143 | E4MYD4_EUTHA; mRNA, clone: RTFL01-50-B10 | ||||
TrEMBL | V4M8U6 | 1e-143 | V4M8U6_EUTSA; Uncharacterized protein | ||||
STRING | XP_010557941.1 | 1e-178 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12130.1 | 1e-134 | C3H family protein |
Publications ? help Back to Top | |||
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