PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010557770.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family GRAS
Protein Properties Length: 509aa    MW: 56817.3 Da    PI: 4.988
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010557770.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS448.15.8e-1371385091374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l+++L+ cA+avs++dl +aq+l+ +l++++s +g+p+qRl ay++e+L arl++s+s++yk+l++ +++   s++ l+++++++ev+P++kf++
  XP_010557770.1 138 LRTVLVFCAKAVSDNDLLMAQWLIDELRQMVSVSGEPIQRLGAYLLEGLVARLSSSGSSIYKSLNCCPEP--ASTDLLSYMHILYEVCPYFKFGY 230
                     5789*************************************************************99998..699******************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     + aN aI ea+++e+rvHi+Df+i+qG QW++L+qa+a+Rp+gpp++RiTg+++  s   +   l+ +g++ ak+A++++vpfefn+ v  + ++
  XP_010557770.1 231 MSANGAIAEAMKEENRVHIVDFQIGQGSQWVTLIQAFAARPGGPPRIRITGIDDVMSAyaRGGGLSIVGNKFAKLADQFKVPFEFNA-VPVSGSE 324
                     ******************************************************888788999************************.7999*** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     +++e+L ++pgEalaVn+++ lh+++desvs+e++rd++L++vkslsPkvv++veqe+++n++ Fl rf+e+++yy+a+f+s++++lpr +++ri
  XP_010557770.1 325 VKPENLGIRPGEALAVNFAFVLHHMPDESVSTENHRDRLLRMVKSLSPKVVTLVEQESNTNTAAFLPRFFETMNYYTAMFESIDVSLPRGHKQRI 419
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +vE+++l+r++vn+vaceg+er+erhe l+kW++r+e+aGF p+pls+ ++++++ ll+++++  yr+ee++g+l+lgW +r Lv+ +aW+
  XP_010557770.1 420 NVEQHCLARDVVNIVACEGTERVERHELLGKWKSRFEMAGFAPYPLSSLVNSTIEGLLKNYSD-KYRLEEREGALFLGWGNRDLVASCAWK 509
                     **************************************************************5.5*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098569.16112490IPR005202Transcription factor GRAS
PfamPF035142.0E-134138509IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MVLQSQIPDI SDMSTFQPLD NQFNYNSSAK LRYLPVQNPR KRYCTLESSA CNLAGTDSPQ  60
NNSPDDDDDD DDGKSSSLSG SCVTNDVNDL RHKLKELETA MLGPDPDFID CLDSTDSTPC  120
QEIYSWRSTY QAIARRDLRT VLVFCAKAVS DNDLLMAQWL IDELRQMVSV SGEPIQRLGA  180
YLLEGLVARL SSSGSSIYKS LNCCPEPAST DLLSYMHILY EVCPYFKFGY MSANGAIAEA  240
MKEENRVHIV DFQIGQGSQW VTLIQAFAAR PGGPPRIRIT GIDDVMSAYA RGGGLSIVGN  300
KFAKLADQFK VPFEFNAVPV SGSEVKPENL GIRPGEALAV NFAFVLHHMP DESVSTENHR  360
DRLLRMVKSL SPKVVTLVEQ ESNTNTAAFL PRFFETMNYY TAMFESIDVS LPRGHKQRIN  420
VEQHCLARDV VNIVACEGTE RVERHELLGK WKSRFEMAGF APYPLSSLVN STIEGLLKNY  480
SDKYRLEERE GALFLGWGNR DLVASCAWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-611425098375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010557770.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010557768.10.0PREDICTED: scarecrow-like transcription factor PAT1
RefseqXP_010557769.10.0PREDICTED: scarecrow-like transcription factor PAT1
RefseqXP_010557770.10.0PREDICTED: scarecrow-like transcription factor PAT1
RefseqXP_010557771.10.0PREDICTED: scarecrow-like transcription factor PAT1
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLR0G9L10.0R0G9L1_9BRAS; Uncharacterized protein
STRINGXP_010557767.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]