PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010557769.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | GRAS | ||||||||
Protein Properties | Length: 509aa MW: 56817.3 Da PI: 4.988 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 448.1 | 5.8e-137 | 138 | 509 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 l+++L+ cA+avs++dl +aq+l+ +l++++s +g+p+qRl ay++e+L arl++s+s++yk+l++ +++ s++ l+++++++ev+P++kf++ XP_010557769.1 138 LRTVLVFCAKAVSDNDLLMAQWLIDELRQMVSVSGEPIQRLGAYLLEGLVARLSSSGSSIYKSLNCCPEP--ASTDLLSYMHILYEVCPYFKFGY 230 5789*************************************************************99998..699******************** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188 + aN aI ea+++e+rvHi+Df+i+qG QW++L+qa+a+Rp+gpp++RiTg+++ s + l+ +g++ ak+A++++vpfefn+ v + ++ XP_010557769.1 231 MSANGAIAEAMKEENRVHIVDFQIGQGSQWVTLIQAFAARPGGPPRIRITGIDDVMSAyaRGGGLSIVGNKFAKLADQFKVPFEFNA-VPVSGSE 324 ******************************************************888788999************************.7999*** PP GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283 +++e+L ++pgEalaVn+++ lh+++desvs+e++rd++L++vkslsPkvv++veqe+++n++ Fl rf+e+++yy+a+f+s++++lpr +++ri XP_010557769.1 325 VKPENLGIRPGEALAVNFAFVLHHMPDESVSTENHRDRLLRMVKSLSPKVVTLVEQESNTNTAAFLPRFFETMNYYTAMFESIDVSLPRGHKQRI 419 *********************************************************************************************** PP GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +vE+++l+r++vn+vaceg+er+erhe l+kW++r+e+aGF p+pls+ ++++++ ll+++++ yr+ee++g+l+lgW +r Lv+ +aW+ XP_010557769.1 420 NVEQHCLARDVVNIVACEGTERVERHELLGKWKSRFEMAGFAPYPLSSLVNSTIEGLLKNYSD-KYRLEEREGALFLGWGNRDLVASCAWK 509 **************************************************************5.5*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 69.16 | 112 | 490 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.0E-134 | 138 | 509 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 509 aa Download sequence Send to blast |
MVLQSQIPDI SDMSTFQPLD NQFNYNSSAK LRYLPVQNPR KRYCTLESSA CNLAGTDSPQ 60 NNSPDDDDDD DDGKSSSLSG SCVTNDVNDL RHKLKELETA MLGPDPDFID CLDSTDSTPC 120 QEIYSWRSTY QAIARRDLRT VLVFCAKAVS DNDLLMAQWL IDELRQMVSV SGEPIQRLGA 180 YLLEGLVARL SSSGSSIYKS LNCCPEPAST DLLSYMHILY EVCPYFKFGY MSANGAIAEA 240 MKEENRVHIV DFQIGQGSQW VTLIQAFAAR PGGPPRIRIT GIDDVMSAYA RGGGLSIVGN 300 KFAKLADQFK VPFEFNAVPV SGSEVKPENL GIRPGEALAV NFAFVLHHMP DESVSTENHR 360 DRLLRMVKSL SPKVVTLVEQ ESNTNTAAFL PRFFETMNYY TAMFESIDVS LPRGHKQRIN 420 VEQHCLARDV VNIVACEGTE RVERHELLGK WKSRFEMAGF APYPLSSLVN STIEGLLKNY 480 SDKYRLEERE GALFLGWGNR DLVASCAWK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 1e-61 | 142 | 509 | 8 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010557769.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010557768.1 | 0.0 | PREDICTED: scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_010557769.1 | 0.0 | PREDICTED: scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_010557770.1 | 0.0 | PREDICTED: scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_010557771.1 | 0.0 | PREDICTED: scarecrow-like transcription factor PAT1 | ||||
Swissprot | Q9LDL7 | 0.0 | PAT1_ARATH; Scarecrow-like transcription factor PAT1 | ||||
TrEMBL | R0G9L1 | 0.0 | R0G9L1_9BRAS; Uncharacterized protein | ||||
STRING | XP_010557767.1 | 0.0 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48150.2 | 0.0 | GRAS family protein |
Publications ? help Back to Top | |||
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