PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010557756.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 278aa MW: 31780.1 Da PI: 8.5577 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 51.7 | 1.1e-16 | 9 | 51 | 1 | 43 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 +ri + r t+ kR++ +lKKA E S+LC+++v++ii++++ XP_010557756.1 9 ERIAKEKTRVMTYRKRKACLLKKAREFSTLCGVDVCLIIYGPS 51 58889999*********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 16.694 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.6E-15 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.22E-17 | 2 | 91 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.70E-19 | 2 | 52 | No hit | No description |
PRINTS | PR00404 | 3.5E-8 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.0E-16 | 10 | 52 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.5E-8 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.5E-8 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 278 aa Download sequence Send to blast |
MGRKMMRMER IAKEKTRVMT YRKRKACLLK KAREFSTLCG VDVCLIIYGP SRTAVKAAAE 60 EEEETVAEPE TWPTDGNKVH DIIGKYRDTA SSSCRKIFQV HDFLPERGKN NNTDSNKIRP 120 KYRVWDEKLG GCSNEELFGI LGRIEDKIRK AQGLVGFLEE TKRQKRALAE ANQQALCGYS 180 YNHIEQQQFL PWPHLGLPVS YSHDPATMES IKTLMMLSRQ ESYGLFPGFY GGPPHWTQEN 240 IVFNGSDQLP SNWVFDPPPV QSSTQANKWE DDSSKNLV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010557756.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010557756.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL82 | ||||
STRING | XP_010557756.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5948 | 19 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G55690.1 | 7e-41 | M-type_MADS family protein |