PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010557748.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | FAR1 | ||||||||
Protein Properties | Length: 257aa MW: 29786.8 Da PI: 8.7786 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 75 | 1.5e-23 | 90 | 180 | 1 | 89 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fY eYA+++GF vr + ++s +g++ r++ C+k+g++ +++ + e+r+r + r gCka++ vk e +gkw+vt++++ HnH+l XP_010557748.1 90 NFYVEYARRLGFVVRLMQRRRSGIDGRTLARRLGCNKQGFSPNSHGStdFGAEKRPRHSGREGCKATILVKTEISGKWVVTRFVKGHNHPL 180 6***************************************999888755678999**********************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.2E-22 | 90 | 180 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MKIFKCIGFK YFHRVVCACY YQFDPFFFPA SSARPRVHFD SSSPQLFFNL DLGNRDDPGD 60 RKLHGSERGG GEILEPYVGM EFESEDDAKN FYVEYARRLG FVVRLMQRRR SGIDGRTLAR 120 RLGCNKQGFS PNSHGSTDFG AEKRPRHSGR EGCKATILVK TEISGKWVVT RFVKGHNHPL 180 ILTASPYNSL ADKDRQIEEL TRELEQQNLL CSAYRERLLR FMNNVEQQTE ELSFKIRDIV 240 ENVKKLESEM HLNLSFE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010557748.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010557748.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X1 | ||||
TrEMBL | A0A1R3H4Q3 | 4e-94 | A0A1R3H4Q3_COCAP; Uncharacterized protein | ||||
TrEMBL | A0A1R3KL35 | 3e-94 | A0A1R3KL35_9ROSI; Uncharacterized protein | ||||
STRING | XP_010557748.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3918 | 28 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G12850.1 | 5e-80 | FAR1 family protein |