PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010557703.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family WRKY
Protein Properties Length: 480aa    MW: 52333.4 Da    PI: 6.3102
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010557703.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY90.11.8e-28115173160
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     ++DgynWrKYGqK vkg+ef rsYYrCt ++C++kk++e+s   +++v ++Y g+H h+k
  XP_010557703.1 115 MEDGYNWRKYGQKLVKGNEFIRSYYRCTNPNCTAKKQLEQSP-GGQIVGTVYFGQHVHPK 173
                     58****************************************.***************85 PP
2WRKY106.11.8e-33291349159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ++Dgy+WrKYGqK+vkgs++prsYYrC+s+gCpvkk+vers++d k++++tYeg+H+h+
  XP_010557703.1 291 VNDGYRWRKYGQKSVKGSPYPRSYYRCSSSGCPVKKHVERSSQDAKLLITTYEGKHDHD 349
                     58********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081121.322110174IPR003657WRKY domain
SuperFamilySSF1182903.27E-23111174IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.5E-25111174IPR003657WRKY domain
SMARTSM007744.5E-32115173IPR003657WRKY domain
PfamPF031065.3E-22116172IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.0E-35277351IPR003657WRKY domain
SuperFamilySSF1182901.96E-28285351IPR003657WRKY domain
PROSITE profilePS5081134.716286351IPR003657WRKY domain
SMARTSM007741.3E-38291350IPR003657WRKY domain
PfamPF031061.5E-26292348IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MSTEVKVPDC ETELGPPQEA KASEASSTDK IESRPDTDTG TYDSDKTMEE ASEQCQEEAP  60
ESAKPEELKA VPITETLQPR DMASSEKPPK APECSALSLH SASEGSSPFI REKVMEDGYN  120
WRKYGQKLVK GNEFIRSYYR CTNPNCTAKK QLEQSPGGQI VGTVYFGQHV HPKPIGNHSA  180
TGAILPINEH KPKDLSAAVN KEKSCGSRVQ TPQRAEPTAH KGLQVSVISS VDEVKTAILQ  240
SSRIKGESHN SVSPGSKRRK QDGGNTEQSP VDRSRNESRI VVHTQTLFDI VNDGYRWRKY  300
GQKSVKGSPY PRSYYRCSSS GCPVKKHVER SSQDAKLLIT TYEGKHDHDM PPGRIVTPNT  360
MDSEADKAGS KEPSSKGGDG NKNLQSSVVQ IVADDQVADD ESRTKPEQSS TTNGLNQGSI  420
SDVKPEEQKK NRSDQTKEDE RGSLAESGTN PEDKTGSRQE TGAGTEDRAC PETNPPVSGN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-47114353176WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Binds to a 5'-CGTTGACCGAG-3' consensus core sequence which contains a W box, a frequently occurring elicitor-responsive cis-acting element. {ECO:0000269|PubMed:8972846}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00094SELEXTransfer from AT2G04880Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010557703.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:17264121}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010557701.10.0PREDICTED: WRKY transcription factor 1
RefseqXP_010557702.10.0PREDICTED: WRKY transcription factor 1
RefseqXP_010557703.10.0PREDICTED: WRKY transcription factor 1
SwissprotQ9SI371e-150WRKY1_ARATH; WRKY transcription factor 1
TrEMBLE4MX101e-158E4MX10_EUTHA; mRNA, clone: RTFL01-10-D23
TrEMBLV4L0101e-158V4L010_EUTSA; Uncharacterized protein
STRINGXP_010557699.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04880.21e-135zinc-dependent activator protein-1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Qiao Z,Li CL,Zhang W
    WRKY1 regulates stomatal movement in drought-stressed Arabidopsis thaliana.
    Plant Mol. Biol., 2016. 91(1-2): p. 53-65
    [PMID:26820136]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]