PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010557690.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ERF
Protein Properties Length: 222aa    MW: 24024.9 Da    PI: 9.0345
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010557690.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.71.6e-193179355
             AP2  3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    ++GVr ++ +gr++AeIrd ++    ++r++lg+f++ae+Aa+a+++a+++l+g
  XP_010557690.1 31 FRGVRKRP-WGRFAAEIRDpWK----KARVWLGTFDSAEDAARAYDRAARNLRG 79
                    8*******.**********883....5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003809.8E-363093IPR001471AP2/ERF domain
PROSITE profilePS5103223.1433087IPR001471AP2/ERF domain
CDDcd000181.52E-193087No hitNo description
PfamPF008471.3E-123079IPR001471AP2/ERF domain
PRINTSPR003674.1E-103142IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-223188IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.9E-313188IPR001471AP2/ERF domain
PRINTSPR003674.1E-105369IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MIRGRSNAAT AAKPGDLTPA TVTNGLPEIR FRGVRKRPWG RFAAEIRDPW KKARVWLGTF  60
DSAEDAARAY DRAARNLRGP KAKTNFPLAE TPNVNYHHQP YTNCGGGGSG GGSEENRTPG  120
IGSSPMNRPA SSSMSSTLES FSGPRVSRPR PVVVHRKKPV QPRAPDDCHS DCDSSSSVVD  180
DDDDCVLTSS LRKVLPFDLN LPPPMEGHDF SGEDLKVTAL CL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-223188664ATERF1
3gcc_A8e-223188664ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways and could also regulate other AtERFs. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:9756931}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010557690.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA), ethylene and Alternaria brassicicola (locally and systemically). Moderate induction by wounding or drought stress does not require EIN2, whereas induction by NaCl does. Transcripts accumulate slightly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by ethylene, exogenous abscisic acid (ABA), cold and heat stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010557690.11e-163PREDICTED: ethylene-responsive transcription factor 3-like isoform X1
SwissprotO803396e-40ERF82_ARATH; Ethylene-responsive transcription factor 3
TrEMBLA0A0V0HV081e-64A0A0V0HV08_SOLCH; Putative ethylene-responsive transcription factor 3-like
STRINGXP_010557690.11e-162(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.14e-28ethylene responsive element binding factor 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]