PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010557642.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ARF
Protein Properties Length: 1080aa    MW: 119588 Da    PI: 6.7687
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010557642.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3665.7e-21145245198
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae++          ++ +++l  +d + ++W++ ++yr++++r++lt+GW+ Fv+ ++L +gD+v+F   +++
  XP_010557642.1 145 FCKTLTASDTSTHGGFSVPRRAAEKIfpaldfsT--TPPTQELAARDIHDNVWSFCHKYRGQPKRHLLTTGWSLFVSGKRLLAGDSVLFI--RDE 235
                     99*****************************643..344459************************************************..568 PP

                     EE..EEEEE- CS
              B3  89 efelvvkvfr 98 
                     +++l+v+++ 
  XP_010557642.1 236 KQQLLVGIRH 245
                     8889***986 PP
2Auxin_resp117.61e-38271354183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+++s+F+++YnPr+s+seFv++++k+ +a++ +++s+GmRf+m+fete+s +rr++Gtv+g+sdldp+rW+nS+Wr+L+
  XP_010557642.1 271 AAHAAANNSPFTIFYNPRTSPSEFVIPLAKYYRAVHgNQISPGMRFRMMFETEESGTRRYMGTVTGISDLDPLRWKNSQWRNLQ 354
                     79*********************************99*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.84E-38135274IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-37138259IPR015300DNA-binding pseudobarrel domain
CDDcd100173.84E-18144244No hitNo description
SMARTSM010194.3E-19145247IPR003340B3 DNA binding domain
PfamPF023629.8E-19145246IPR003340B3 DNA binding domain
PROSITE profilePS5086311.547145247IPR003340B3 DNA binding domain
PfamPF065072.1E-33271354IPR010525Auxin response factor
PfamPF023091.8E-79751061IPR033389AUX/IAA domain
PROSITE profilePS5174525.5749781062IPR000270PB1 domain
SuperFamilySSF542776.18E-79901057No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1080 aa     Download sequence    Send to blast
MTVAGIGNGA LAAAATAPST NPTGGGSGTV SADMKKGINA ELWQACAGPL VNLPAAGTHV  60
VYFPQGHSEQ VAAWLRKNVD AQNPHYPNLP SKLICFLHNV TLHADPETDE VYAQMTLQPV  120
PSVDKEALLR SDLSLRTNKP QPDFFCKTLT ASDTSTHGGF SVPRRAAEKI FPALDFSTTP  180
PTQELAARDI HDNVWSFCHK YRGQPKRHLL TTGWSLFVSG KRLLAGDSVL FIRDEKQQLL  240
VGIRHANRQS ANLSSSVLST DSMHIGILAA AAHAAANNSP FTIFYNPRTS PSEFVIPLAK  300
YYRAVHGNQI SPGMRFRMMF ETEESGTRRY MGTVTGISDL DPLRWKNSQW RNLQVGWDES  360
TAGEKRNRVS IWEIESVTAP FFISPPPYFR SKRLREPGLP DIDLSDMDRL FKRVMPWLGD  420
DFLSRDSQAL RGLSLVQWMN LQQNPSLAHS LQSNYLHSLS GSILPNLPGS DLSRLQFGFS  480
PPQITQQSNA DFNPQRLPQQ VQQVGQLSKI SSSSNPLGSI LQPQPQQLDD VTQQSRQNNM  540
SQSLLTSQVQ NQVLQTQNIM QGNNVLQQQR PSLQQQQNSV QTQNIMQGNM GSNQQQNSMQ  600
FQIPDQVNQH LLMPDNQIQQ LQLLQKLQQQ QQQALLGQQT MLPHHRTQLA LLQDQQRQML  660
DGSEMPQSNI ISQQIAKGGN HDARFSHLPQ QPKLENRQTV TSSELPGRVG LSPFFSTNQL  720
SVSGASGLTG MANDIPSCSN SPSAINNPTG IQLMVNKQSN MSASSMGDDM VHSVSMLLHP  780
KTRETVASGK SYVKQKESWP KCDVRPSVDI SKCQSEGLLP PHSYMSGTFA QTEHFDASSS  840
TTSVCISQNN NVFSSNPHPT MVRDSVQERE IQTEIQGTVL YGADIDGQMG MLVDSNSPFI  900
RGITAESRKD FSSTLTPGCM IENYDNSKDA QQEDLSSSLV SQSFSVPDMT FNSIDSNNDG  960
GFANRGPWPS QPQFQRKRTY TKVYKRGAVG RSIDITSYSG YDELKQDLGR RFGIEGQLEN  1020
RGGIGWKLVY VDHENDALLV GDDPWEEFVN CVRCIRILSP QEELYCDFDF GSCVTSDNGA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1603137644389Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010557642.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010557642.10.0PREDICTED: auxin response factor 19-like isoform X1
RefseqXP_019059643.10.0PREDICTED: auxin response factor 19-like isoform X1
SwissprotQ6Z2W30.0ARFE_ORYSJ; Auxin response factor 5
TrEMBLA0A2N9HN130.0A0A2N9HN13_FAGSY; Auxin response factor
STRINGXP_010557642.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM162291013
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19