PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010557600.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 287aa    MW: 32841.2 Da    PI: 9.9419
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010557600.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.92.3e-085081132
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg 32
                     rg W +eEd++l  +v+ +G g+W+ I+r+ g
   XP_010557600.1 50 RGLWKPEEDLILRSYVEAFGEGNWADISRRTG 81
                     788**************************988 PP
2Myb_DNA-binding53.17.2e-17137182148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg +++eE++l+++ +k+lG++ W++Ia +++ gRt++++k++w+++l
   XP_010557600.1 137 RGGMSPEEEDLIIRMHKLLGNR-WSLIAGRLP-GRTDNEVKNYWNTHL 182
                      6779******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500908.90845131IPR017877Myb-like domain
SuperFamilySSF466897.9E-84681IPR009057Homeodomain-like
SMARTSM007171.3E-849133IPR001005SANT/Myb domain
PfamPF002492.3E-65081IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-195182IPR009057Homeodomain-like
CDDcd001671.10E-553131No hitNo description
SuperFamilySSF466891.5E-20117187IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-19118138IPR009057Homeodomain-like
PROSITE profilePS5129425.801132186IPR017930Myb domain
SMARTSM007171.7E-16136184IPR001005SANT/Myb domain
PfamPF002493.0E-15137182IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.3E-24139185IPR009057Homeodomain-like
CDDcd001675.32E-13140182No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MQSLSLSPSL YGLYKDFTIF NALLIQRERE RERERERDME KREGKCRVKR GLWKPEEDLI  60
LRSYVEAFGE GNWADISRRT GLIPSPKKKT FFFFYRPDFT GNLTALHNQF PIVSGLKRGG  120
KSCRLRWKNY LRPNIKRGGM SPEEEDLIIR MHKLLGNRWS LIAGRLPGRT DNEVKNYWNT  180
HLNKKSESSK RKADESGGKT QGIDTDTKNK QCASPSLMAS KGVMGQGREE ANGEKREDSI  240
VTSSTWTEGM NGFGYGIASP LPFPDYETSV FDDPQSSFAF ADMFPLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-1910918829110B-MYB
1h8a_C4e-194818525127MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12636RERERERERER
Functional Description ? help Back to Top
Source Description
UniProtTranscription activation factor positively regulating trichomes development (PubMed:24803498). Has a function nearly equivalent to that of GL1 and can complement gl1 mutants (PubMed:24803498). {ECO:0000269|PubMed:24803498}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010557600.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin (IAA). {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010557600.10.0PREDICTED: transcription factor MYB82-like isoform X1
SwissprotQ9LTF72e-74MYB82_ARATH; Transcription factor MYB82
TrEMBLR0GVN84e-76R0GVN8_9BRAS; Uncharacterized protein
STRINGXP_010557600.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52600.12e-75myb domain protein 82