PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010557600.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | MYB | ||||||||
Protein Properties | Length: 287aa MW: 32841.2 Da PI: 9.9419 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.9 | 2.3e-08 | 50 | 81 | 1 | 32 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg 32 rg W +eEd++l +v+ +G g+W+ I+r+ g XP_010557600.1 50 RGLWKPEEDLILRSYVEAFGEGNWADISRRTG 81 788**************************988 PP | |||||||
2 | Myb_DNA-binding | 53.1 | 7.2e-17 | 137 | 182 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg +++eE++l+++ +k+lG++ W++Ia +++ gRt++++k++w+++l XP_010557600.1 137 RGGMSPEEEDLIIRMHKLLGNR-WSLIAGRLP-GRTDNEVKNYWNTHL 182 6779******************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 8.908 | 45 | 131 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 7.9E-8 | 46 | 81 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-8 | 49 | 133 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-6 | 50 | 81 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-19 | 51 | 82 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.10E-5 | 53 | 131 | No hit | No description |
SuperFamily | SSF46689 | 1.5E-20 | 117 | 187 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.2E-19 | 118 | 138 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.801 | 132 | 186 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-16 | 136 | 184 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.0E-15 | 137 | 182 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.3E-24 | 139 | 185 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.32E-13 | 140 | 182 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 287 aa Download sequence Send to blast |
MQSLSLSPSL YGLYKDFTIF NALLIQRERE RERERERDME KREGKCRVKR GLWKPEEDLI 60 LRSYVEAFGE GNWADISRRT GLIPSPKKKT FFFFYRPDFT GNLTALHNQF PIVSGLKRGG 120 KSCRLRWKNY LRPNIKRGGM SPEEEDLIIR MHKLLGNRWS LIAGRLPGRT DNEVKNYWNT 180 HLNKKSESSK RKADESGGKT QGIDTDTKNK QCASPSLMAS KGVMGQGREE ANGEKREDSI 240 VTSSTWTEGM NGFGYGIASP LPFPDYETSV FDDPQSSFAF ADMFPLL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-19 | 109 | 188 | 29 | 110 | B-MYB |
1h8a_C | 4e-19 | 48 | 185 | 25 | 127 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 26 | 36 | RERERERERER |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activation factor positively regulating trichomes development (PubMed:24803498). Has a function nearly equivalent to that of GL1 and can complement gl1 mutants (PubMed:24803498). {ECO:0000269|PubMed:24803498}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010557600.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin (IAA). {ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010557600.1 | 0.0 | PREDICTED: transcription factor MYB82-like isoform X1 | ||||
Swissprot | Q9LTF7 | 2e-74 | MYB82_ARATH; Transcription factor MYB82 | ||||
TrEMBL | R0GVN8 | 4e-76 | R0GVN8_9BRAS; Uncharacterized protein | ||||
STRING | XP_010557600.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52600.1 | 2e-75 | myb domain protein 82 |