PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010557410.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

bZIP

Protein Properties

Length: 495aa MW: 54775.6 Da PI: 8.8747

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010557410.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32	2.7e-10	189	230	4	45
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k rr+++NReAAr+sR+RKka++++Le +L++ ++L XP_010557410.1 189 AKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLTQLEQEL 230 6889*************************8766666655544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	5.6E-7	186	279	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.278	188	232	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.7E-7	189	230	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	5.9E-8	189	233	No hit	No description
SuperFamily	SSF57959	7.5E-7	190	232	No hit	No description
CDD	cd14708	2.84E-20	190	236	No hit	No description
PROSITE pattern	PS00036	0	193	208	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.7E-29	272	346	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 495 aa Download sequence Send to blast
MANHRISDAT NHHQLPYSLL HGLSNPPPGF SNQEGSTTFD FGELEEAIVL QGVKFRNDEA 60 KPPLFAGGDS GRGAAATTLE MFPSWPMRAH QTPPRGNSKS RGESTDSGSA NFSGSQQTES 120 PMSSKKPSHG ISPELRRNNL MLNNSNNNTT NVSDASRTGL ASTSQTPAPP PRTADDKRKA 180 TTSGKQLDAK TLRRLAQNRE AARKSRLRKK AYVQQLESSR IKLTQLEQEL QRARSQGLLL 240 GGGCGPAGPG ITPGAAIFDM EYGRWLEEEN RHMSEIRTGV QAHLSDSDLR VTVDGYIAHF 300 DELFRLKAAA AKSDVFHLVT GTWMSPAERC FIWIAGFRPS DLIKMVVGQM ELVTEQQMMG 360 IYSLQHSSQQ AEEALSQGLE QLQHSLIDHI SSLPLLDDFH QMALAIAKLS NLEGFVRQAD 420 NLRQQTIHQL RRILTVRQAA RCFLIIGEYY GRLRALSSLW LSRPREGLIS DEAASCQTTT 480 DLQMVQSSRN HFSNF

Sequence ? help Back to Top

Protein Sequence Length: 495 aa Download sequence Send to blast

MANHRISDAT NHHQLPYSLL HGLSNPPPGF SNQEGSTTFD FGELEEAIVL QGVKFRNDEA  60
KPPLFAGGDS GRGAAATTLE MFPSWPMRAH QTPPRGNSKS RGESTDSGSA NFSGSQQTES  120
PMSSKKPSHG ISPELRRNNL MLNNSNNNTT NVSDASRTGL ASTSQTPAPP PRTADDKRKA  180
TTSGKQLDAK TLRRLAQNRE AARKSRLRKK AYVQQLESSR IKLTQLEQEL QRARSQGLLL  240
GGGCGPAGPG ITPGAAIFDM EYGRWLEEEN RHMSEIRTGV QAHLSDSDLR VTVDGYIAHF  300
DELFRLKAAA AKSDVFHLVT GTWMSPAERC FIWIAGFRPS DLIKMVVGQM ELVTEQQMMG  360
IYSLQHSSQQ AEEALSQGLE QLQHSLIDHI SSLPLLDDFH QMALAIAKLS NLEGFVRQAD  420
NLRQQTIHQL RRILTVRQAA RCFLIIGEYY GRLRALSSLW LSRPREGLIS DEAASCQTTT  480
DLQMVQSSRN HFSNF

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00131	DAP	Transfer from AT1G08320	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010557410.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010557409.1	0.0	PREDICTED: transcription factor TGA2.2 isoform X1
Refseq	XP_010557410.1	0.0	PREDICTED: transcription factor TGA2.2 isoform X1
Refseq	XP_010557412.1	0.0	PREDICTED: transcription factor TGA2.2 isoform X1
Swissprot	Q93XM6	0.0	TGA9_ARATH; Transcription factor TGA9
TrEMBL	A0A1J3D5K8	0.0	A0A1J3D5K8_NOCCA; TGACG-sequence-specific DNA-binding protein TGA-2.1
STRING	XP_010557409.1	0.0	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	0.0	bZIP family protein

Publications ? help Back to Top
Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]