PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010557387.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C3H
Protein Properties Length: 391aa    MW: 43431.2 Da    PI: 8.1399
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010557387.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.54e-126589226
                    -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                    +++ C ++++t tCk+Gd+CkF H+
  XP_010557387.1 65 GEKDCTHYMQTRTCKFGDSCKFDHP 89
                    7889********************8 PP
2zf-CCCH37.54e-12115141127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++ C+++++t  CkyG+rCkF+H++
  XP_010557387.1 115 PGEPDCPYYLKTQRCKYGSRCKFNHPK 141
                     5789*********************96 PP
3zf-CCCH38.71.6e-12160184327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +++C f+++tG Ck+G++CkF+H++
  XP_010557387.1 160 EPPCAFYMKTGKCKFGPSCKFHHPK 184
                     79*********************96 PP
4zf-CCCH36.67.7e-12221246126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     ++++ C+f++++G CkyG++C+++H+
  XP_010557387.1 221 PGEVDCPFYLKMGSCKYGPTCRYNHP 246
                     57899********************9 PP
5zf-CCCH43.17.1e-14293318126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +++++C+++++tG+Ck+G+rCkF+H+
  XP_010557387.1 293 PGQAECDYYMKTGECKFGERCKFHHP 318
                     5789*********************8 PP
6zf-CCCH37.73.5e-12351372627
                     -SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
                     C+++++tG CkyG+ CkF H+p
  XP_010557387.1 351 CPYYMKTGMCKYGAACKFDHPP 372
                     ********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003566.7E-46390IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.0616391IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.33E-66490IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-96589IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.4E-56988IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.103114142IPR000571Zinc finger, CCCH-type
SMARTSM003566.0E-6114141IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-9116141IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5119141IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.0E-5120139IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.539157185IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-6157184IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-10160184IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-6161185IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-5162183IPR000571Zinc finger, CCCH-type
SMARTSM003566.5E-7220247IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.685220248IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-9222246IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-5224247IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.100.001226245IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.497292320IPR000571Zinc finger, CCCH-type
SMARTSM003564.9E-7292319IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-11294318IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.11E-6294320IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-5298318IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.375345373IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-6345372IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.54E-6349372IPR000571Zinc finger, CCCH-type
PfamPF006429.6E-9351372IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-5351370IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MYHHLLNNTA SHLGYSQLLQ HQDTWPPGVE VPSAPGVKRT SEDYLTKRSK LESTDHLPIY  60
PQRPGEKDCT HYMQTRTCKF GDSCKFDHPI WVPEGGIPDW KEAPLAPNEP YPVRPGEPDC  120
PYYLKTQRCK YGSRCKFNHP KAMTAGTLDY SDALPDRPSE PPCAFYMKTG KCKFGPSCKF  180
HHPKDIQISY SGQETGSSEG LTSLTFTPAP YHNSKGLPVR PGEVDCPFYL KMGSCKYGPT  240
CRYNHPDRTA FVPPAAGITY PLVASTAANV NLGVVTPAAS LYQPTIGVYP QRPGQAECDY  300
YMKTGECKFG ERCKFHHPID RSAAATSKQA SQESVKLTLA GYPRREGAVH CPYYMKTGMC  360
KYGAACKFDH PPPGEVMTRT TTSLETCSED N
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010557387.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010557387.10.0PREDICTED: zinc finger CCCH domain-containing protein 37-like
SwissprotQ941Q30.0C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLR0G4B10.0R0G4B1_9BRAS; Uncharacterized protein
STRINGXP_010557387.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM97612836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.10.0floral homeotic protein (HUA1)