PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010557354.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | MYB | ||||||||
Protein Properties | Length: 258aa MW: 29550.3 Da PI: 7.587 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54 | 3.7e-17 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l+++++ +G +W+++++ g+ R++k+c++rw +yl XP_010557354.1 13 RGLWSPEEDEKLLRYITSHGHSSWSSVPKLAGLERCGKSCRLRWINYL 60 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 57.1 | 4.2e-18 | 66 | 109 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T+eE+++++d+++ lG++ W+ Ia++++ gRt++++k++w++ XP_010557354.1 66 RGSFTAEEEQIIIDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 109 89********************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.4E-25 | 5 | 63 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.37 | 8 | 60 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.12E-29 | 10 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-12 | 12 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.1E-15 | 13 | 60 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.25E-10 | 16 | 60 | No hit | No description |
PROSITE profile | PS51294 | 27.07 | 61 | 115 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-26 | 64 | 115 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-16 | 65 | 113 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.7E-16 | 66 | 109 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.03E-12 | 68 | 108 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MGHRCCGKQK VKRGLWSPEE DEKLLRYITS HGHSSWSSVP KLAGLERCGK SCRLRWINYL 60 RPDLRRGSFT AEEEQIIIDV HRILGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLMSQGL 120 DPRTHNLMPS HKRASSLPSN DNKAKAKHHR PLDDHETFSI IKDSPSIKIK PSLPTTMNNP 180 PTYDSSSIML GLFDESYPDS WDVAFGRQFQ EDPIPVERGD TIDDQSQTLD VTNMDVSFDC 240 STFDPDFAAL FSSMEWSF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-31 | 13 | 115 | 7 | 108 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00350 | DAP | Transfer from AT3G12720 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010557354.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010557354.1 | 0.0 | PREDICTED: myb-related protein Hv33 | ||||
TrEMBL | D7L0J7 | 1e-100 | D7L0J7_ARALL; Uncharacterized protein | ||||
STRING | XP_010557354.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7955 | 25 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12720.1 | 2e-95 | myb domain protein 67 |