PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010557327.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ARF
Protein Properties Length: 672aa    MW: 74726.9 Da    PI: 7.2739
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010557327.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.89.9e-191512182999
                     -..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
              B3  29 kkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                     ++ +  t++ +d +g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD++vF   ++ +++ l+v+++r+
  XP_010557327.1 151 PPVQ--TVVAKDIHGAVWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFL--RNpDSGDLCVGIRRA 218
                     4444..89***********************************************..56689999****996 PP
2Auxin_resp111.96.3e-37268351183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                     a+ +a+ +++FevvY+Prast+eF+vk+e+v+ a+++++  GmRfkmafetedss++++ +Gtv++v+ +dp+rWpnS+Wr+L+
  XP_010557327.1 268 AVARAARGKAFEVVYYPRASTPEFCVKAEEVRGAMRIRWFSGMRFKMAFETEDSSRISWfMGTVSSVQVADPIRWPNSPWRLLQ 351
                     56789999**************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010196.9E-8126219IPR003340B3 DNA binding domain
SuperFamilySSF1019363.27E-22128219IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-27134222IPR015300DNA-binding pseudobarrel domain
CDDcd100171.25E-15134217No hitNo description
PfamPF023621.6E-16149218IPR003340B3 DNA binding domain
PROSITE profilePS5086311.18155219IPR003340B3 DNA binding domain
PfamPF065078.4E-32268351IPR010525Auxin response factor
PROSITE profilePS5174520.189559640IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0009743Biological Processresponse to carbohydrate
GO:0010154Biological Processfruit development
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0048366Biological Processleaf development
GO:0048441Biological Processpetal development
GO:0048442Biological Processsepal development
GO:0048589Biological Processdevelopmental growth
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 672 aa     Download sequence    Send to blast
MEQEKSLDPQ LWHACAGSMV QIPPVSSTVF YFPQGHAEHA HAPPDFHAPP RVPSLILCRV  60
AAVNFLADAD TDEVFAKITL IPLPNNANNN NDLELDAVLE NSGGGCGGDA GKPXXXXXXX  120
XXXXXXXGAG FPAPRYCAET IFPRLDYTAD PPVQTVVAKD IHGAVWKFRH IYRGTPRRHL  180
LTTGWSTFVN HKKLVAGDSI VFLRNPDSGD LCVGIRRAKR GGLAAPENTG NSYSGFSGFL  240
RGDENTAATT NLMMKRCGGD GKETVGEAVA RAARGKAFEV VYYPRASTPE FCVKAEEVRG  300
AMRIRWFSGM RFKMAFETED SSRISWFMGT VSSVQVADPI RWPNSPWRLL QVVWDEPDLL  360
QNVKRVNPWL VEVVSNMPSI HHLSPFSPRK KPRFPQPFDF PFDGTQFPIP SNDNNNAPAG  420
IQGARQAQQL FGTPSFLSDL NLNTYSGNKF QSRGMFFPGF KQLNHHPSPR FYDTTLSPLQ  480
REPISSVSCS LTMGNPSPVQ ENKTGSGTTH QFLLFGQPIL TEQQVLSRKR SLEEPNPEAE  540
DKHSPHGLTW NCSLQDLETG HCKVFMESED VGRTLDLSVM GSYQELYRTL TDMFSIEERL  600
DLLTHVMYRD GNGDNKRIGD EPFSDFMRSA KRLTIKMDPG GENVRKTWLT GIQKGENGID  660
ASRKTGPLSI FA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-70737251388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010557327.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010557327.10.0PREDICTED: auxin response factor 10-like
SwissprotQ9SKN50.0ARFJ_ARATH; Auxin response factor 10
TrEMBLA0A384K8810.0A0A384K881_ARATH; Auxin response factor
TrEMBLC0SV660.0C0SV66_ARATH; Auxin response factor (Fragment)
STRINGXP_010557327.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58027130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28350.10.0auxin response factor 10
Publications ? help Back to Top
  1. Yang ZB, et al.
    TAA1-regulated local auxin biosynthesis in the root-apex transition zone mediates the aluminum-induced inhibition of root growth in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2889-904
    [PMID:25052716]
  2. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]
  3. Ye Y, et al.
    Germostatin resistance locus 1 encodes a PHD finger protein involved in auxin-mediated seed dormancy and germination.
    Plant J., 2016. 85(1): p. 3-15
    [PMID:26611158]
  4. Nguyen TC,Obermeier C,Friedt W,Abrams SR,Snowdon RJ
    Disruption of Germination and Seedling Development in Brassica napus by Mutations Causing Severe Seed Hormonal Imbalance.
    Front Plant Sci, 2016. 7: p. 322
    [PMID:27014334]
  5. Liu Z, et al.
    Repression of callus initiation by the miRNA-directed interaction of auxin-cytokinin in Arabidopsis thaliana.
    Plant J., 2016. 87(4): p. 391-402
    [PMID:27189514]
  6. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  7. Wójcik AM,Nodine MD,Gaj MD
    miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 2024
    [PMID:29321785]
  8. Lin JS, et al.
    MicroRNA160 Modulates Plant Development and Heat Shock Protein Gene Expression to Mediate Heat Tolerance in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 68
    [PMID:29449855]