PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010557279.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

Dof

Protein Properties

Length: 333aa MW: 35616.1 Da PI: 10.1653

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010557279.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.4	7.5e-39	74	133	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++ l+cprCdstntkfCyynny+lsqPr+fCkaCrryWt+GGalrnvPvGgg+r+nkk XP_010557279.1 74 PDGPLNCPRCDSTNTKFCYYNNYNLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKKG 133 566799***************************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-29	64	129	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.8E-33	77	132	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.879	78	132	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	80	116	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence Send to blast
MVFLKIPNTC TNSSQHNQQQ GTGSVINGHE ALSHQISPLP TNPNPTHHHG GGASARIGGG 60 STEERARVSK LPQPDGPLNC PRCDSTNTKF CYYNNYNLSQ PRHFCKACRR YWTRGGALRN 120 VPVGGGCRRN KKGKTGNTNK SSASSSNNQN KQTATAQLQT NSQFSFLSTL QNLSQLGNIG 180 LNLASINGNN QAHFGLPNNS SGNSRSLMNE HGFLHVGIGA NSTSGLMNSN NINNNQNNIL 240 TSNQFAFFDP PTSGLYTFQS EGNMGINVVG LSSSSASMAD SRVSQMAPVK TEESHLINLS 300 RPVPGLTSPE NNHFNQYWTG SGFSGSSSSG RLS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements (By similarity). Involved in the regulation of root development (PubMed:23057675). The PEAR proteins (e.g. DOF2.4, DOF5.1, DOF3.2, DOF1.1, DOF5.6 and DOF5.3) activate gene expression that promotes radial growth of protophloem sieve elements (PubMed:30626969). Element of a regulatory network controlling indole glucosinolates (IGS) biosynthesis, probably by inducing the expression of accurate genes (e.g. CYP83B1). Promotes apical dominance (PubMed:16740150). {ECO:0000250\|UniProtKB:Q9M2U1, ECO:0000269\|PubMed:16740150, ECO:0000269\|PubMed:23057675, ECO:0000269\|PubMed:30626969}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010557279.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin and salicylic acid (SA) (PubMed:10758484). Induced transiently in response to the generalist herbivore S.littoralis. Triggered by methyl jasmonate (MeJA) and wounding (PubMed:16740150). {ECO:0000269\|PubMed:10758484, ECO:0000269\|PubMed:16740150}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010557279.1	0.0	PREDICTED: dof zinc finger protein DOF1.1 isoform X2
Swissprot	Q8L9V6	3e-97	DOF11_ARATH; Dof zinc finger protein DOF1.1
TrEMBL	R0GT34	8e-97	R0GT34_9BRAS; Uncharacterized protein
STRING	XP_010557278.1	0.0	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28810.2	3e-70	Dof family protein

Publications ? help Back to Top
Miyashima S, et al. Mobile PEAR transcription factors integrate positional cues to prime cambial growth. Nature, 2019. 565(7740): p. 490-494 [PMID:30626969]