PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010557279.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | Dof | ||||||||
Protein Properties | Length: 333aa MW: 35616.1 Da PI: 10.1653 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 123.4 | 7.5e-39 | 74 | 133 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++ l+cprCdstntkfCyynny+lsqPr+fCkaCrryWt+GGalrnvPvGgg+r+nkk XP_010557279.1 74 PDGPLNCPRCDSTNTKFCYYNNYNLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKKG 133 566799***************************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-29 | 64 | 129 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 5.8E-33 | 77 | 132 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.879 | 78 | 132 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 80 | 116 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 333 aa Download sequence Send to blast |
MVFLKIPNTC TNSSQHNQQQ GTGSVINGHE ALSHQISPLP TNPNPTHHHG GGASARIGGG 60 STEERARVSK LPQPDGPLNC PRCDSTNTKF CYYNNYNLSQ PRHFCKACRR YWTRGGALRN 120 VPVGGGCRRN KKGKTGNTNK SSASSSNNQN KQTATAQLQT NSQFSFLSTL QNLSQLGNIG 180 LNLASINGNN QAHFGLPNNS SGNSRSLMNE HGFLHVGIGA NSTSGLMNSN NINNNQNNIL 240 TSNQFAFFDP PTSGLYTFQS EGNMGINVVG LSSSSASMAD SRVSQMAPVK TEESHLINLS 300 RPVPGLTSPE NNHFNQYWTG SGFSGSSSSG RLS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements (By similarity). Involved in the regulation of root development (PubMed:23057675). The PEAR proteins (e.g. DOF2.4, DOF5.1, DOF3.2, DOF1.1, DOF5.6 and DOF5.3) activate gene expression that promotes radial growth of protophloem sieve elements (PubMed:30626969). Element of a regulatory network controlling indole glucosinolates (IGS) biosynthesis, probably by inducing the expression of accurate genes (e.g. CYP83B1). Promotes apical dominance (PubMed:16740150). {ECO:0000250|UniProtKB:Q9M2U1, ECO:0000269|PubMed:16740150, ECO:0000269|PubMed:23057675, ECO:0000269|PubMed:30626969}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010557279.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin and salicylic acid (SA) (PubMed:10758484). Induced transiently in response to the generalist herbivore S.littoralis. Triggered by methyl jasmonate (MeJA) and wounding (PubMed:16740150). {ECO:0000269|PubMed:10758484, ECO:0000269|PubMed:16740150}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010557279.1 | 0.0 | PREDICTED: dof zinc finger protein DOF1.1 isoform X2 | ||||
Swissprot | Q8L9V6 | 3e-97 | DOF11_ARATH; Dof zinc finger protein DOF1.1 | ||||
TrEMBL | R0GT34 | 8e-97 | R0GT34_9BRAS; Uncharacterized protein | ||||
STRING | XP_010557278.1 | 0.0 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28810.2 | 3e-70 | Dof family protein |
Publications ? help Back to Top | |||
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