PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010557278.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | Dof | ||||||||
Protein Properties | Length: 342aa MW: 36586 Da PI: 10.0443 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 123.3 | 7.8e-39 | 83 | 142 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++ l+cprCdstntkfCyynny+lsqPr+fCkaCrryWt+GGalrnvPvGgg+r+nkk XP_010557278.1 83 PDGPLNCPRCDSTNTKFCYYNNYNLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKKG 142 566799***************************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-29 | 73 | 138 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 6.1E-33 | 86 | 141 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.879 | 87 | 141 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 89 | 125 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 342 aa Download sequence Send to blast |
MGFSSISSFI DPPNWPQPQT NSSQHNQQQG TGSVINGHEA LSHQISPLPT NPNPTHHHGG 60 GASARIGGGS TEERARVSKL PQPDGPLNCP RCDSTNTKFC YYNNYNLSQP RHFCKACRRY 120 WTRGGALRNV PVGGGCRRNK KGKTGNTNKS SASSSNNQNK QTATAQLQTN SQFSFLSTLQ 180 NLSQLGNIGL NLASINGNNQ AHFGLPNNSS GNSRSLMNEH GFLHVGIGAN STSGLMNSNN 240 INNNQNNILT SNQFAFFDPP TSGLYTFQSE GNMGINVVGL SSSSASMADS RVSQMAPVKT 300 EESHLINLSR PVPGLTSPEN NHFNQYWTGS GFSGSSSSGR LS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010557278.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010557278.1 | 0.0 | PREDICTED: dof zinc finger protein DOF2.2 isoform X1 | ||||
Swissprot | Q9ZV33 | 2e-97 | DOF22_ARATH; Dof zinc finger protein DOF2.2 | ||||
TrEMBL | A0A1J3GG63 | 2e-98 | A0A1J3GG63_NOCCA; Dof zinc finger protein DOF2.2 | ||||
STRING | XP_010557278.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5336 | 17 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28810.1 | 4e-78 | Dof family protein |
Publications ? help Back to Top | |||
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