PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010556971.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C3H
Protein Properties Length: 428aa    MW: 46849.3 Da    PI: 7.7541
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010556971.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.57.2e-114773127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                    ++++ C+f++rtG C yG++C+++H+p
  XP_010556971.1 47 PGQRDCPFYLRTGLCGYGNNCRYNHPP 73
                    5789*********************97 PP
2zf-CCCH31.43.2e-1092116327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     ++ C +f++tGtCkyG +Ck++H++
  XP_010556971.1  92 QPDCEYFLKTGTCKYGHTCKYHHPK 116
                     789********************96 PP
3zf-CCCH35.81.3e-11137161327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     ++ C++++rtGtC++G  CkF+H++
  XP_010556971.1 137 EKSCPYYLRTGTCRFGVACKFHHPQ 161
                     667********************97 PP
4zf-CCCH38.71.6e-12266290327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +++Cr+f+ tGtCkyGd Ck++H++
  XP_010556971.1 266 QPECRYFMSTGTCKYGDDCKYNHPK 290
                     689********************96 PP
5zf-CCCH361.2e-11310335126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     ++++ C +f+++G+Ck+G++CkF H+
  XP_010556971.1 310 PGQPACTNFMAYGFCKFGPNCKFDHS 335
                     57899********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.0E-64673IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.5214674IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-84873IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.09E-55072IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-45271IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.5389117IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-489116IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-892116IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-693117IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-495115IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.605134162IPR000571Zinc finger, CCCH-type
SMARTSM003568.9E-5134161IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-6134161IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-9136161IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.8E-5139160IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.23263291IPR000571Zinc finger, CCCH-type
SMARTSM003564.7E-7264290IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-10266290IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.01E-6267291IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-6269290IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-7309336IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.403309337IPR000571Zinc finger, CCCH-type
PfamPF006427.4E-9311335IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-6311338IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-4315335IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MRPMSETQHD QSSIGSNRSS EKIEDSFRRI KLNGEGDVQS GLYPDRPGQR DCPFYLRTGL  60
CGYGNNCRYN HPPYVSQAVI YYKDDLPERV GQPDCEYFLK TGTCKYGHTC KYHHPKDRNG  120
AGPVLFNVLG FPMRQGEKSC PYYLRTGTCR FGVACKFHHP QPVNGPSAAY GVSSYSSVGL  180
PYLGGMTMVS MPPATYGAVP RAQVPQAYVP VMVSPSHGIL PPQGWTTYTA APNQIYNVKD  240
QPDSSSSASV PVAVTSNQGL AGRLDQPECR YFMSTGTCKY GDDCKYNHPK ERNSQSPQNL  300
LSPVVLPSRP GQPACTNFMA YGFCKFGPNC KFDHSLPPYP YNMALTMSPS PATYASPVST  360
RLRISPPNGS DSPPLSEVKP AETNQSSEAE KPGINPEHVN SEVEVSSENS ALTNDHQHQN  420
QQCGGISD
Functional Description ? help Back to Top
Source Description
UniProtPossesses RNA-binding and ribonuclease activities in vitro. {ECO:0000269|PubMed:18582464}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010556971.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010556971.10.0PREDICTED: zinc finger CCCH domain-containing protein 3-like
SwissprotQ94AD90.0C3H3_ARATH; Zinc finger CCCH domain-containing protein 3
TrEMBLD7KEA00.0D7KEA0_ARALL; Predicted protein
STRINGXP_010556971.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23802675
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.21e-174C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]