PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010556877.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family HSF
Protein Properties Length: 300aa    MW: 34940.4 Da    PI: 5.072
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010556877.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind116.12.2e-36201122103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y+i+ed+++++++sws+ +nsf+v+d+e+fa ++Lp+yFkhsnf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+++ll++
  XP_010556877.1  20 FLTKTYNIVEDSSTDQIVSWSRGNNSFIVWDPETFALTLLPRYFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQRHLLKN 105
                     9****************************************************************999.........****************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     i+r+k +
  XP_010556877.1 106 IRRRKAS 112
                     ****976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467853.81E-3616109IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.2E-3816109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.9E-6216109IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.1E-3120109IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-192043IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-195870IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405983IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-197183IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MGDNLPAPME GIHETGPPPF LTKTYNIVED SSTDQIVSWS RGNNSFIVWD PETFALTLLP  60
RYFKHSNFSS FVRQLNTYGF RKVDPDRWEF ANEGFLRGQR HLLKNIRRRK ASSQPHTQFQ  120
SLDSNNNIEV GRFGLDGEID RLRRDKRVLF VELVKLRQQQ QNIKTSVELM EEKLKKTEMK  180
QQRMINFLAR AMKSPGFLQN LMIREGEIDK KRRRRIDQGQ GKDLNNVADE EGDAIATFVK  240
VEPEEYGDIA EFGLCSQFEG DAMMEDQRQE LGMEMDHIDG LWDDLLLSDE IQKEEVYSLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A7e-261811218123Heat shock factor protein 1
5d5u_B7e-26210911129Heat shock factor protein 1
5d5v_B7e-26210911129Heat shock factor protein 1
5d5v_D7e-26210911129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1209214KKRRRR
2210215KRRRRI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010556877.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010556876.10.0PREDICTED: heat stress transcription factor A-6b
RefseqXP_010556877.10.0PREDICTED: heat stress transcription factor A-6b
SwissprotQ9LUH81e-104HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A067GG691e-116A0A067GG69_CITSI; Uncharacterized protein
STRINGXP_010556876.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.12e-98heat shock transcription factor A6B