PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010556847.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ERF
Protein Properties Length: 187aa    MW: 20180 Da    PI: 10.0134
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010556847.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2544.2e-172372255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    +y+GVr ++ +gr++AeIrdp   gk++r++lg f+ ae+Aa a++aa+++++g
  XP_010556847.1 23 HYRGVRKRP-WGRYAAEIRDP---GKKTRVWLGPFDPAEDAAMAYDAAAREFRG 72
                    6********.**********8...557************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.1E-362386IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-212381IPR016177DNA-binding domain
CDDcd000189.60E-172380No hitNo description
PROSITE profilePS5103222.4452380IPR001471AP2/ERF domain
PfamPF008476.2E-112372IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-302380IPR001471AP2/ERF domain
PRINTSPR003672.4E-92435IPR001471AP2/ERF domain
PRINTSPR003672.4E-94662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016020Cellular Componentmembrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MARKSENGSH SVAAGGGKAR EVHYRGVRKR PWGRYAAEIR DPGKKTRVWL GPFDPAEDAA  60
MAYDAAAREF RGSKAKTNFP LPTSGSGDLG PPAAPRRRFP FPCHQQHRQL AGVIPQAAGF  120
FMDPGRAAAL RAELARVYPI RFDPVEVGLG LGLRVAVESE PECSAVVDCK PGKELNLDLN  180
LAPPVDV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-221981164ATERF1
3gcc_A3e-221981164ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00542DAPTransfer from AT5G44210Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010556847.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010556847.11e-134PREDICTED: ethylene-responsive transcription factor 9
SwissprotQ9FE675e-66ERF80_ARATH; Ethylene-responsive transcription factor 9
TrEMBLA0A087GP554e-67A0A087GP55_ARAAL; Uncharacterized protein
STRINGXP_010556847.11e-133(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.19e-47erf domain protein 9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]
  3. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]