PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010556656.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

NAC

Protein Properties

Length: 401aa MW: 45588.9 Da PI: 7.2664

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010556656.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	112.2	5.6e-35	5	131	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 +Gf F+P deelv++yL+ + g + ++++i+ev+iy+++Pw+L+ + ++++ +++ wyfF + ++k+ ++r+t+sg+Wk+tg + ++++ XP_010556656.1 5 VGFGFRPYDEELVNDYLNVMTLGLTELVDNAISEVNIYSFDPWELRfQsRIDTsGDSVWYFFYRLENKK----LQSRKTRSGFWKKTGPTLDIKR 95 7**********************888889**********8424444436679*999886....5788899*********** PP NAM 95 k..kgelvglkktLvfykgrapkgektdWvmheyrl 128 + + ++g kk+Lvf+ gr+p+g+ t+Wvmhey+ XP_010556656.1 96 RrgIRDKIGEKKVLVFHLGRTPNGVGTEWVMHEYHT 131 9544456*************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	38.933	3	149	IPR003441	NAC domain
SuperFamily	SSF101941	9.42E-36	5	149	IPR003441	NAC domain
Pfam	PF02365	6.2E-19	5	130	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence Send to blast
MAAVVGFGFR PYDEELVNDY LNVMTLGLTE LVDNAISEVN IYSFDPWELR FQSRIDTSGD 60 SVWYFFYRLE NKKLQSRKTR SGFWKKTGPT LDIKRRRGIR DKIGEKKVLV FHLGRTPNGV 120 GTEWVMHEYH TTFFPADQRT YVICKVEFKG EDLAIPSANG AEPSRSLNNV GDSSTGSVVV 180 QQDHGNSWQA GQSQGSEQFG GSLSRQPQSP NLDFEGMRNF VGNLTEKEWN LRFKNSEIDS 240 YNVMQEDYNG YRPHKSLTGL CSDCSSDSDD ESSSPTDHKE TRAWNVDGAS TTNGQCQAEK 300 KNIRTPSTDH QAEGHPRRLQ LQGKYQRVMM PPQEKGENDY MQQMEKEMKT AQDTSIKGKS 360 HRKGCLVFEG ATDKSRNNKL INTIVGFILF LLIIRELTSV R

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence Send to blast

MAAVVGFGFR PYDEELVNDY LNVMTLGLTE LVDNAISEVN IYSFDPWELR FQSRIDTSGD  60
SVWYFFYRLE NKKLQSRKTR SGFWKKTGPT LDIKRRRGIR DKIGEKKVLV FHLGRTPNGV  120
GTEWVMHEYH TTFFPADQRT YVICKVEFKG EDLAIPSANG AEPSRSLNNV GDSSTGSVVV  180
QQDHGNSWQA GQSQGSEQFG GSLSRQPQSP NLDFEGMRNF VGNLTEKEWN LRFKNSEIDS  240
YNVMQEDYNG YRPHKSLTGL CSDCSSDSDD ESSSPTDHKE TRAWNVDGAS TTNGQCQAEK  300
KNIRTPSTDH QAEGHPRRLQ LQGKYQRVMM PPQEKGENDY MQQMEKEMKT AQDTSIKGKS  360
HRKGCLVFEG ATDKSRNNKL INTIVGFILF LLIIRELTSV R

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-17	6	129	20	140	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-17	6	129	20	140	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-17	6	129	20	140	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-17	6	129	20	140	NO APICAL MERISTEM PROTEIN
3swm_A	1e-17	6	130	23	144	NAC domain-containing protein 19
3swm_B	1e-17	6	130	23	144	NAC domain-containing protein 19
3swm_C	1e-17	6	130	23	144	NAC domain-containing protein 19
3swm_D	1e-17	6	130	23	144	NAC domain-containing protein 19
3swp_A	1e-17	6	130	23	144	NAC domain-containing protein 19
3swp_B	1e-17	6	130	23	144	NAC domain-containing protein 19
3swp_C	1e-17	6	130	23	144	NAC domain-containing protein 19
3swp_D	1e-17	6	130	23	144	NAC domain-containing protein 19
3ulx_A	1e-17	6	129	18	138	Stress-induced transcription factor NAC1
4dul_A	1e-17	6	129	20	140	NAC domain-containing protein 19
4dul_B	1e-17	6	129	20	140	NAC domain-containing protein 19

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010556656.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010556656.1	0.0	PREDICTED: NAC domain-containing protein 69-like
STRING	XP_010556656.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1982	19	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01550.1	7e-53	NAC domain containing protein 69