PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010556651.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 348aa MW: 39063.5 Da PI: 7.3242 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 97.2 | 1e-30 | 37 | 130 | 1 | 89 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.se 89 f+kv tpsdv+k++rlv+pk++ae++ ++++++++ l ++d++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F+++ r ++ XP_010556651.1 37 FDKVVTPSDVGKLNRLVIPKQHAEKYfplnSSSSQNGTLLNFQDRNGKMWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRSVRtES 130 89***************************966667889*************************************************7643243 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.5E-41 | 32 | 147 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.57E-29 | 34 | 143 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.74E-26 | 35 | 125 | No hit | No description |
SMART | SM01019 | 2.3E-22 | 37 | 143 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.2E-28 | 37 | 131 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.494 | 37 | 141 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 348 aa Download sequence Send to blast |
MDLSLGTTSS DQEHDRDQEM ADNNASILIP VEKEHMFDKV VTPSDVGKLN RLVIPKQHAE 60 KYFPLNSSSS QNGTLLNFQD RNGKMWRFRY SYWNSSQSYV MTKGWSRFVK EKKLDAGDIV 120 SFQRSVRTES AKSRLFIDWR HRPDINLVQN PAIPSSSLLH HNQFGNFNFN FNFNFPTPVQ 180 GNRLPEYSVP RGLNFGVSSN SYHQQHQYYR QEREIVGYGY GSLVGRCWPL DQRNPSGSDR 240 LVIDSVPVVP GRITPTVMAP PLPPEGAAAG KRLRLFGVNM ECGTDDHHSS SSSGRDMVDE 300 SWEREGGCGE MGGSSSSPSA LRLSLSGDDD QFAKKGKSLC SFSLDLDP |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 2e-60 | 31 | 145 | 2 | 116 | B3 domain-containing transcription factor NGA1 |
5os9_B | 2e-60 | 31 | 145 | 2 | 116 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Regulates lateral organ growth. Functionally redundant with NGA1, NGA2 and NGA4. {ECO:0000269|PubMed:16603651}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_010556651.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010556651.1 | 0.0 | PREDICTED: B3 domain-containing transcription factor NGA3 | ||||
Swissprot | Q9MAN1 | 1e-120 | NGA3_ARATH; B3 domain-containing transcription factor NGA3 | ||||
TrEMBL | A0A3P6CE49 | 1e-122 | A0A3P6CE49_BRACM; Uncharacterized protein | ||||
STRING | XP_010556651.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13990 | 17 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G01030.1 | 1e-110 | B3 family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|