PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010556648.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | MYB_related | ||||||||
Protein Properties | Length: 702aa MW: 76608.6 Da PI: 5.7115 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.6 | 4.5e-16 | 24 | 68 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+eE++++++a +++G W +I +++g ++t+ q++s+ qk+ XP_010556648.1 24 RERWTEEEHDRFLEALRLYGRA-WQRIEEHIG-TKTAVQIRSHAQKF 68 78******************88.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.97E-17 | 18 | 74 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.096 | 19 | 73 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 2.3E-17 | 22 | 71 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.5E-12 | 23 | 71 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-13 | 24 | 67 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-8 | 24 | 64 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.57E-9 | 26 | 69 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0042754 | Biological Process | negative regulation of circadian rhythm | ||||
GO:0043433 | Biological Process | negative regulation of sequence-specific DNA binding transcription factor activity | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0048574 | Biological Process | long-day photoperiodism, flowering | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 702 aa Download sequence Send to blast |
METNTSGEEL VTKTRKPYTI TKQRERWTEE EHDRFLEALR LYGRAWQRIE EHIGTKTAVQ 60 IRSHAQKFFT KLEKEAQAKG IPVCQALDIE IPPPRPKRKP ITPYPRKPGN GTSTSQVSSA 120 KDGKIALSAS SSHCNQALDL EKEPLTEPDG VEKISNGKEN QDDNCSGVST RPPEAHCSSI 180 SSVNKYPLAN KMAPKDPNTF RESEPSLRKA AADNGTSKTS NADNSCYSQD NAAKDLPHVN 240 LGREDNDVNG LPLADNMYDI QNYPWRFPVH VQNGVPATSA SSQHQDNMHR SSHQAFSAFV 300 PACHTQDDYR SFIQISSTLS NLIVSALLQN PAAHAAATYA ASFWPYANVG SSNDSSTSTI 360 QTDGAFPLSQ MSSPPNMAVI AAATVAAATA WWAAHGLLPI CAPFACSPMS ATTDPPPSSA 420 QTAMPETDKK EAATENTQEP AMEPSDALEV QNLASKSPAS SSDDSEEIGR NKKEAGSKAD 480 DHKEEAVAAV QEQVVNSNTT QKKKMVDPSS CGSNTPSGSD VETDALEKAE KDKEEDVKET 540 EGNEPATESS NRRARSKDNS SDSWKEVSEE GRMAFEALFA RGRLPQSFSP PIDVEKLKES 600 SEKEKINLDG KEREMWVQMD HKSKTQESIC KGKDEKSIAA AKDEKEVVIG NGKSIIKTRR 660 TGFKPYKRCS MEAKESRVAN ISSSQAEENA SKRLRLEGEA ST |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the circadian clock. Binds to the promoter region of APRR1/TOC1 and TCP21/CHE to repress their transcription. Represses both CCA1 and itself. {ECO:0000269|PubMed:12015970, ECO:0000269|PubMed:19095940, ECO:0000269|PubMed:19218364, ECO:0000269|PubMed:9657154}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00119 | DAP | Transfer from AT1G01060 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010556648.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation with peak levels occurring around 1 hour after dawn. Up-regulated by APRR1/TOC1 and transiently by light treatment. Down-regulated by APRR5, APRR7 and APRR9. {ECO:0000269|PubMed:12574129, ECO:0000269|PubMed:19095940, ECO:0000269|PubMed:19218364, ECO:0000269|PubMed:19286557, ECO:0000269|PubMed:20233950, ECO:0000269|PubMed:9657154}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010556648.1 | 0.0 | PREDICTED: protein LHY-like isoform X3 | ||||
Swissprot | Q6R0H1 | 0.0 | LHY_ARATH; Protein LHY | ||||
TrEMBL | A0A076L4N2 | 0.0 | A0A076L4N2_9ROSI; Late elongated hypocotyl a | ||||
STRING | XP_010556640.1 | 0.0 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01060.3 | 1e-170 | MYB_related family protein |