PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010556493.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | TALE | ||||||||
Protein Properties | Length: 406aa MW: 46423.1 Da PI: 6.5095 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.6 | 2.5e-09 | 333 | 368 | 20 | 55 |
HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 +k +yps++e+ LA+++gL+++q+ +WF N+R ++ XP_010556493.1 333 YKWPYPSESEKVALAESTGLDQKQINNWFINQRKRH 368 5679*****************************885 PP | |||||||
2 | ELK | 37.7 | 4.3e-13 | 288 | 309 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK++LlrKYsgyL+sLkqE+s XP_010556493.1 288 ELKNHLLRKYSGYLSSLKQELS 309 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 1.5E-22 | 139 | 183 | IPR005540 | KNOX1 |
Pfam | PF03790 | 9.9E-23 | 140 | 182 | IPR005540 | KNOX1 |
SMART | SM01256 | 1.7E-29 | 193 | 244 | IPR005541 | KNOX2 |
Pfam | PF03791 | 3.7E-25 | 198 | 243 | IPR005541 | KNOX2 |
PROSITE profile | PS51213 | 11.296 | 288 | 308 | IPR005539 | ELK domain |
Pfam | PF03789 | 2.9E-10 | 288 | 309 | IPR005539 | ELK domain |
SMART | SM01188 | 3.5E-7 | 288 | 309 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 13.021 | 308 | 371 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.18E-19 | 309 | 381 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 4.0E-13 | 310 | 375 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-27 | 313 | 374 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 8.12E-12 | 320 | 372 | No hit | No description |
Pfam | PF05920 | 1.2E-16 | 328 | 367 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 346 | 369 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 406 aa Download sequence Send to blast |
MEEYHHDSSS TPQRVSFLYA PSSSPNKNDN NNNSDTNNNN SNNNYTSGYN SNHHHMLFPN 60 MGSLVHHHHH HQSSENCFRS DHDQPNPVVK SEASSSRSLS HYSLLMRAIH NHQESNNNNN 120 EDDNSNSNSN MPVGGSDVEA MKAKIIAHPQ YSSLLEAYMD CQKIGAPPEV LDRLTAVRQE 180 FETRHRSAAA ASRDYGASRD PELDQFMEAY CDMLVKYREE LTRPIQEAMG FIRRIEAQLN 240 MLCQGPIRIF NNADGKCDGA GSSEEDQDNN SGGETELPEI DPRAEDRELK NHLLRKYSGY 300 LSSLKQELSK KKKKGKLPKE ARQKLLTWWE LHYKWPYPSE SEKVALAEST GLDQKQINNW 360 FINQRKRHWK PSEDMQFMVM EGLHPQSAAL YMDGHYMGDG PYRLGP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May play a role in meristem function, and may be involved in maintaining cells in an undifferentiated, meristematic state, and its expression disappears at the same time the shoot apex undergoes the transition from vegetative to reproductive development (PubMed:11934861). Positive regulator of LATERAL ORGAN BOUNDARIES (LOB) (PubMed:11934861). Probably binds to the DNA sequence 5'-TGAC-3' (PubMed:11934861). Able to traffic from the L1 to the L2/L3 layers of the meristem, presumably through plasmodesmata (PubMed:12900451). {ECO:0000269|PubMed:11934861, ECO:0000269|PubMed:12900451, ECO:0000269|PubMed:7866029}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010556493.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by ASYMMETRIC LEAVES1 (AS1) and ASYMMETRIC LEAVES2 (AS2). |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ970033 | 2e-51 | FJ970033.1 Brassica napus brevipedicellus (bp) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010556494.1 | 0.0 | PREDICTED: homeobox protein knotted-1-like 1 | ||||
Refseq | XP_019059551.1 | 0.0 | PREDICTED: homeobox protein knotted-1-like 1 | ||||
Swissprot | P46639 | 0.0 | KNAT1_ARATH; Homeobox protein knotted-1-like 1 | ||||
TrEMBL | R0FIH2 | 0.0 | R0FIH2_9BRAS; Uncharacterized protein | ||||
STRING | XP_010556493.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6566 | 23 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G08150.1 | 1e-175 | KNOTTED-like from Arabidopsis thaliana |