PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010556492.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 280aa    MW: 31878 Da    PI: 10.672
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010556492.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.43e-172065147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W + Ed +l ++v+ +G+ +W+ Ia++m+ gRt+k+c++rw++ 
   XP_010556492.1 20 RGHWRPSEDSKLRELVAVHGPQNWNFIAERMQ-GRTGKSCRLRWFNQ 65
                     899*****************************.***********996 PP
2Myb_DNA-binding48.12.7e-1573116247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       ++++eE+e+l+ +++ +G++ W+ I+r +  gRt++ +k++w+ +
   XP_010556492.1  73 RPFSEEEEEKLLAVHRAFGNK-WAMISRLFH-GRTDNAVKNHWHVL 116
                      68*******************.*********.***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.0721570IPR017930Myb domain
SMARTSM007176.2E-141968IPR001005SANT/Myb domain
PfamPF002498.9E-172065IPR001005SANT/Myb domain
SuperFamilySSF466895.99E-2820113IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.6E-262173IPR009057Homeodomain-like
CDDcd001674.97E-122364No hitNo description
PROSITE profilePS5129418.53771121IPR017930Myb domain
SMARTSM007171.1E-1271119IPR001005SANT/Myb domain
PfamPF002493.0E-1272116IPR001005SANT/Myb domain
CDDcd001671.06E-874117No hitNo description
Gene3DG3DSA:1.10.10.605.4E-2074120IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MSEMEETCNK NQRRSRVCTR GHWRPSEDSK LRELVAVHGP QNWNFIAERM QGRTGKSCRL  60
RWFNQLDPRI SKRPFSEEEE EKLLAVHRAF GNKWAMISRL FHGRTDNAVK NHWHVLMARK  120
FRQQSESYKR ELNQSAHNKP EAGKRLSTTL ETTQVNPQGL GLSNGNGSDE SKNVKKNSWN  180
KLKREKNNLR AQYLQKGYRL SKTMQDPSLR HHFSTFPANS DSFLALKPVS IPIPIPEPPP  240
PSSSSSVSST VSAAETTMVT GYLETTTPPT FIDFLGVGAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-29191216108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010556492.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010556492.20.0PREDICTED: trichome differentiation protein GL1
TrEMBLV4K4Z86e-98V4K4Z8_EUTSA; Uncharacterized protein
STRINGXP_010556492.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63001846
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G29020.21e-96myb domain protein 110