PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010556491.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 304aa    MW: 34033.9 Da    PI: 6.3905
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010556491.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.26.8e-171462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l+ +++++G+g +W + ++++g++R++k+c++rw++yl
   XP_010556491.1 14 KGPWSPEEDAKLKSYIEKHGTGgNWIALPQKIGLRRCGKSCRLRWLNYL 62
                     79*********************************************97 PP
2Myb_DNA-binding39.11.7e-1269111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +++eEd ++  +    G++ W+tIa+++  gRt++++k++w++
   XP_010556491.1  69 GGFSEEEDNIICSLYISIGSR-WSTIASKLS-GRTDNDIKNYWNT 111
                      569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.385966IPR017930Myb domain
SuperFamilySSF466891.63E-2611109IPR009057Homeodomain-like
SMARTSM007176.3E-131364IPR001005SANT/Myb domain
PfamPF002494.1E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.9E-251569IPR009057Homeodomain-like
CDDcd001675.16E-101662No hitNo description
SMARTSM007172.2E-1067115IPR001005SANT/Myb domain
PROSITE profilePS5129414.40967117IPR017930Myb domain
PfamPF002492.7E-1069111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.4E-2270116IPR009057Homeodomain-like
CDDcd001677.56E-871113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDAKLKSYIE KHGTGGNWIA LPQKIGLRRC GKSCRLRWLN  60
YLRPNIRHGG FSEEEDNIIC SLYISIGSRW STIASKLSGR TDNDIKNYWN TRLKKKFLSG  120
QLNGNCAKRD DCDYMSMMKQ EVNEDAMATS LVTSSHDTHH HGQNLNCSLE VPYNLPNQSS  180
SLKDFILELD GRFSNGEEDG RGTTSGNNSF ALQQLPSSSL SASSIEYTTP QAMLQTEFGT  240
KHSETGFQTA SRQSEYNYDD GLMFSYTMTC GESNMGSWSY IASLMALTPS CYSDDYNLTM  300
QPEL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-23141177108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010556491.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010556491.10.0PREDICTED: transcription factor RAX3-like
TrEMBLA0A438F8Q33e-86A0A438F8Q3_VITVI; Transcription factor RAX3
TrEMBLE0CNX03e-86E0CNX0_VITVI; Uncharacterized protein
STRINGXP_010556491.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.14e-79myb domain protein 84