PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010556485.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family GRF
Protein Properties Length: 539aa    MW: 57419.7 Da    PI: 8.1841
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010556485.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC77.81e-24222266145
             WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                     d+epgrCrRtDGKkWRCs+++++++k+CErH++rgr+rsrk++e 
  XP_010556485.1 222 DPEPGRCRRTDGKKWRCSKDAVPDQKYCERHMNRGRHRSRKPVEG 266
                     79****************************************985 PP
2QLQ49.61.2e-17154188337
             QLQ   3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                     FT +Q+ +L++Q l+yKy+ an P+P+ Ll++i+k
  XP_010556485.1 154 FTQSQWIELEHQTLIYKYMCANIPIPSALLLPIRK 188
                     *********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.8E-8152188IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166619.771153188IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088808.6E-12154187IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166726.039222266IPR014977WRC domain
PfamPF088795.7E-21223265IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MDFGLVDLDS LVGSSSSSSG FGSTVSDPLT KQKLYGSGLF RKQERPVNDE HHDHGDDKDD  60
GSLKGCKRMA KAVGDGLSGS DNGKSMSLLR SNCSPLFSAA AAAAAAAPQH HPEDQMLSFS  120
SPKSNAQNAN LLSYFQLSTV SPYSTRNAGC NNGFTQSQWI ELEHQTLIYK YMCANIPIPS  180
ALLLPIRKAF ESAGLSCLSG GLLRSNALGW GGFHLGFSSN ADPEPGRCRR TDGKKWRCSK  240
DAVPDQKYCE RHMNRGRHRS RKPVEGQVQG HSSSAAMAKA SAAGGATCAS GIASKNTTTF  300
ALSQNQPKHS SMSDSINGVF MGKNTTSGEK HQEMSSMPML SSRNASLRPE DSNFLFKHQN  360
PFEKSSYNEF GFVPSESLLN PSPHGGSSRS VYLSDQATEA PSHHQLLQFM DNCPQNPSLA  420
GSSDFLSRNR GKTATTTLRL SYESDTVPMG LGVQGGSSSN IPLSWDSSIG GPLGEALHNS  480
SQSSPTGVLQ KTTFVSMSNS STGSSPRADS GRVYEGSSFC TDMLGPVPSL VHCSWSVPP
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010556485.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010556485.10.0PREDICTED: growth-regulating factor 1-like
TrEMBLA0A061FG661e-122A0A061FG66_THECC; Growth-regulating factor 1
STRINGXP_010556485.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14542886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.11e-61growth-regulating factor 1