PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010556427.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 316aa    MW: 33893.1 Da    PI: 8.3016
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010556427.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.29.1e-191661147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEde l ++v+ +G+++W++I++ ++ gR++k+c++rw + 
   XP_010556427.1 16 KGPWSPEEDEALQRLVQTYGPRNWSLISKSIP-GRSGKSCRLRWCNQ 61
                     79******************************.***********985 PP
2Myb_DNA-binding551.9e-1770112347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++T+eEd+ +++a++++G++ W+tIar ++ gRt++ +k++w++ 
   XP_010556427.1  70 PFTAEEDDTIIRAHARFGNK-WATIARLLN-GRTDNAIKNHWNST 112
                      89******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.5761166IPR017930Myb domain
SuperFamilySSF466892.06E-3213109IPR009057Homeodomain-like
SMARTSM007172.6E-171564IPR001005SANT/Myb domain
PfamPF002491.7E-181661IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-261769IPR009057Homeodomain-like
CDDcd001671.63E-161860No hitNo description
SMARTSM007176.6E-1567115IPR001005SANT/Myb domain
PROSITE profilePS5129420.83668117IPR017930Myb domain
PfamPF002495.0E-1570112IPR001005SANT/Myb domain
CDDcd001674.23E-1270113No hitNo description
Gene3DG3DSA:1.10.10.602.7E-2370116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MASSSSASAK DTDRIKGPWS PEEDEALQRL VQTYGPRNWS LISKSIPGRS GKSCRLRWCN  60
QLSPEVEHRP FTAEEDDTII RAHARFGNKW ATIARLLNGR TDNAIKNHWN STLKRKCSSM  120
ADGGSSDADL EQPLKRSASL GAGTNLSTCL SLNPGSPAGS ELSDSSLPGG CCAVSASPVY  180
RPAARTGAVL PPATDPPTSL SLSLPGSGLS EPMSHGSDSN RVTSPPSHHH PLPKHSFARL  240
PPAPPPPPPP SQEVHGGGEM GLDEQFFSKE FLAVLQEMIR QEVRSYMSGI DQKGICFQTE  300
AIRNAVVKRI GISKID
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C4e-42151163104C-Myb DNA-Binding Domain
1msf_C4e-42151163104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010556427.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010556427.10.0PREDICTED: transcription factor MYB44-like
SwissprotO231609e-93MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A067KZQ61e-145A0A067KZQ6_JATCU; MYB family protein
STRINGXP_010556427.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67728135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.11e-78myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]