PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010556384.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family RAV
Protein Properties Length: 355aa    MW: 39843.6 Da    PI: 9.691
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010556384.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2422.4e-1360108155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+ykGV   + +grW A+I++      ++r++lg+f  ++eAa+a++ a+++++g
  XP_010556384.1  60 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFSEEDEAARAYDVAAQRFRG 108
                     89****9888.8*********3.....5**********99*************98 PP
2B398.44.4e-31192292196
                     EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                     f+k+ tpsdv+k++rlv+pk+ ae+h      +++++++ l +ed +g++W+++++y+++s++yvltkGW++Fvk+++L++gD+v F++++ +++
  XP_010556384.1 192 FEKTVTPSDVGKLNRLVIPKHQAEKHfplpsCNVSAKGVLLNFEDITGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKRLRAGDVVGFSRSNGHDQ 286
                     99***************************995667899**************************************************8877888 PP

                     ..EEEE CS
              B3  91 elvvkv 96 
                     +l++++
  XP_010556384.1 287 QLYIGW 292
                     788776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.58E-2560118No hitNo description
PfamPF008478.6E-960108IPR001471AP2/ERF domain
SuperFamilySSF541714.38E-1760116IPR016177DNA-binding domain
PROSITE profilePS5103220.42961116IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-2061117IPR001471AP2/ERF domain
SMARTSM003803.8E-2961122IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.105.6E-40184294IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-32190291IPR015300DNA-binding pseudobarrel domain
CDDcd100175.81E-29191283No hitNo description
PfamPF023621.6E-27192292IPR003340B3 DNA binding domain
SMARTSM010191.2E-23192296IPR003340B3 DNA binding domain
PROSITE profilePS5086313.493192296IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MDVNSVDEST TSTETVCTPP ATRSPARKSP ERFCRVGSGL SVVLDSENGV EFESRKLPSS  60
KYKGVVPQPN GRWGAQIYEK HQRVWLGTFS EEDEAARAYD VAAQRFRGRD AITNFKNARL  120
DDAEVEFLNA HSKSEIVDML RKHTYNEELE QNKRRLRSRY GNDERNENVK TRSGDGNDGV  180
SGKEFRPAEA LFEKTVTPSD VGKLNRLVIP KHQAEKHFPL PSCNVSAKGV LLNFEDITGK  240
VWRFRYSYWN SSQSYVLTKG WSRFVKEKRL RAGDVVGFSR SNGHDQQLYI GWKAISGSGS  300
DKEPGRVVRL FGVNISKGDC LNDAVANGGG DKRVREAEEM ISLGCSKRQR ILVAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A4e-6818830110123DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to bipartite recognition sequences composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'. May function as negative regulator of plant growth and development. {ECO:0000269|PubMed:15040885, ECO:0000269|PubMed:9862967}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010556384.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by brassinosteroid and zeatin. {ECO:0000269|PubMed:15040885}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010556384.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor RAV1-like
SwissprotQ9ZWM90.0RAV1_ARATH; AP2/ERF and B3 domain-containing transcription factor RAV1
TrEMBLA0A1J3F7I90.0A0A1J3F7I9_NOCCA; AP2/ERF and B3 domain-containing transcription factor RAV1
STRINGXP_010556384.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM84827121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.11e-179related to ABI3/VP1 1
Publications ? help Back to Top
  1. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  2. Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
    AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
    Plant Sci., 2015. 241: p. 78-95
    [PMID:26706061]
  3. Huang Y,Feng CZ,Ye Q,Wu WH,Chen YF
    Arabidopsis WRKY6 Transcription Factor Acts as a Positive Regulator of Abscisic Acid Signaling during Seed Germination and Early Seedling Development.
    PLoS Genet., 2016. 12(2): p. e1005833
    [PMID:26829043]
  4. Zhao Y, et al.
    ABA receptor PYL9 promotes drought resistance and leaf senescence.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(7): p. 1949-54
    [PMID:26831097]