PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010556295.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | TCP | ||||||||
Protein Properties | Length: 348aa MW: 36137.7 Da PI: 7.039 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 119.6 | 3.8e-37 | 75 | 147 | 3 | 74 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.e 74 +k+ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+p+i+++tgt++ +as++ + XP_010556295.1 75 PKRGSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTVPASAMaN 147 68889**********************************************************9999977732 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.8E-31 | 79 | 207 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 28.016 | 80 | 134 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 348 aa Download sequence Send to blast |
MDPKNPNQHQ VPNFLNPPPP PQRQNQSMGD ISNGDNNEDD NGVNKQAEIK DLQIMVADRE 60 VSKRQQQQQR LVLGPKRGSN KDRHTKVEGR GRRIRMPALC AARIFQLTRE LGHKSDGETI 120 QWLLQQAEPS IIAATGTGTV PASAMANAAA AGGSGGSLSM GLVMSHDLGG GGIGGSGSNS 180 RPTWPIVGIG GAGEGEAGGG GGASSAHHHN LPSGLWPNVG LQPPSSGGGG GAGVSTAGLM 240 SENGGSGGGG YRIGFSGFDF PGVSNIGPMS FASILGSGSN NQMPGLELGL SQDGNVGVLN 300 PQAFTQIYHQ MGHARVLHHH HHHHQQHPHE NQQETSENDD DSQGSGRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269|PubMed:12631321, ECO:0000269|PubMed:16123132}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010556295.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010556295.1 | 0.0 | PREDICTED: LOW QUALITY PROTEIN: transcription factor TCP20 | ||||
Swissprot | Q9LSD5 | 1e-104 | TCP20_ARATH; Transcription factor TCP20 | ||||
TrEMBL | A0A1J3GLP7 | 1e-114 | A0A1J3GLP7_NOCCA; Transcription factor TCP20 | ||||
TrEMBL | R0HDZ9 | 1e-114 | R0HDZ9_9BRAS; Uncharacterized protein | ||||
TrEMBL | V4KNB9 | 1e-114 | V4KNB9_EUTSA; Uncharacterized protein | ||||
STRING | XP_010556295.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4050 | 27 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27010.1 | 7e-70 | TCP family protein |