PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010556295.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family TCP
Protein Properties Length: 348aa    MW: 36137.7 Da    PI: 7.039
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010556295.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP119.63.8e-3775147374
             TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.e 74 
                     +k+ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+p+i+++tgt++ +as++ +
  XP_010556295.1  75 PKRGSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTVPASAMaN 147
                     68889**********************************************************9999977732 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.8E-3179207IPR005333Transcription factor, TCP
PROSITE profilePS5136928.01680134IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MDPKNPNQHQ VPNFLNPPPP PQRQNQSMGD ISNGDNNEDD NGVNKQAEIK DLQIMVADRE  60
VSKRQQQQQR LVLGPKRGSN KDRHTKVEGR GRRIRMPALC AARIFQLTRE LGHKSDGETI  120
QWLLQQAEPS IIAATGTGTV PASAMANAAA AGGSGGSLSM GLVMSHDLGG GGIGGSGSNS  180
RPTWPIVGIG GAGEGEAGGG GGASSAHHHN LPSGLWPNVG LQPPSSGGGG GAGVSTAGLM  240
SENGGSGGGG YRIGFSGFDF PGVSNIGPMS FASILGSGSN NQMPGLELGL SQDGNVGVLN  300
PQAFTQIYHQ MGHARVLHHH HHHHQQHPHE NQQETSENDD DSQGSGRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269|PubMed:12631321, ECO:0000269|PubMed:16123132}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010556295.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010556295.10.0PREDICTED: LOW QUALITY PROTEIN: transcription factor TCP20
SwissprotQ9LSD51e-104TCP20_ARATH; Transcription factor TCP20
TrEMBLA0A1J3GLP71e-114A0A1J3GLP7_NOCCA; Transcription factor TCP20
TrEMBLR0HDZ91e-114R0HDZ9_9BRAS; Uncharacterized protein
TrEMBLV4KNB91e-114V4KNB9_EUTSA; Uncharacterized protein
STRINGXP_010556295.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40502759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27010.17e-70TCP family protein
Publications ? help Back to Top
  1. Zhu P, et al.
    Arabidopsis small nucleolar RNA monitors the efficient pre-rRNA processing during ribosome biogenesis.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(42): p. 11967-11972
    [PMID:27708161]
  2. Wu JF, et al.
    LWD-TCP complex activates the morning gene CCA1 in Arabidopsis.
    Nat Commun, 2016. 7: p. 13181
    [PMID:27734958]
  3. Guan P, et al.
    Interacting TCP and NLP transcription factors control plant responses to nitrate availability.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424
    [PMID:28202720]
  4. Guan P
    Dancing with Hormones: A Current Perspective of Nitrate Signaling and Regulation in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 1697
    [PMID:29033968]
  5. Zhang N, et al.
    MOS1 functions closely with TCP transcription factors to modulate immunity and cell cycle in Arabidopsis.
    Plant J., 2018. 93(1): p. 66-78
    [PMID:29086441]
  6. Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C
    Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2018. 176(2): p. 1694-1708
    [PMID:29133375]
  7. Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K
    Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis.
    Microbes Environ., 2017. 32(4): p. 314-323
    [PMID:29187692]