PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010556233.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family HSF
Protein Properties Length: 383aa    MW: 43720.2 Da    PI: 4.4604
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010556233.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind104.87.1e-33171092102
                     HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
    HSF_DNA-bind   2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                     Flkk ye+++d +++++isws +  nsfv++d +ef+  +Lpk+Fkhsnf+SF+RQLn+YgF+kv+ ++         weF+++ F +g+k+ ++
  XP_010556233.1  17 FLKKCYEMVDDGSTDSIISWSrTGDNSFVIWDITEFSVGLLPKFFKHSNFSSFIRQLNIYGFRKVDADR---------WEFANDGFVRGQKDAMK 102
                     9********************5556*****************************************999.........***************** PP

                     XXXXXXX CS
    HSF_DNA-bind  96 kikrkks 102
                     +i r+k+
  XP_010556233.1 103 TITRRKN 109
                     *****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.3E-3313107IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.0E-5113107IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.17E-3013107IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000568.9E-191740IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.5E-2817107IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.9E-195668IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405781IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.9E-196981IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MVKSAHDGSS STSVAPFLKK CYEMVDDGST DSIISWSRTG DNSFVIWDIT EFSVGLLPKF  60
FKHSNFSSFI RQLNIYGFRK VDADRWEFAN DGFVRGQKDA MKTITRRKNV QSLDQRKSSH  120
KQENTSDQLE KPENSELWKD VENLKSDKNV MMQELIKLRQ YQETADGKLL NLKDRVQGME  180
ESQQQMLSFL VMVMQNPSLL VQLLQPKESS WRVTEATAIV EEVTEEGESL PTSLPLVTYQ  240
PPQNGTVKPV VSNSTELVGS VSSDMLKDFI RNADMMKICV DENHVPLIIP DLYDDGAWEK  300
LLLLSPSKKS AKNATLDEER SHGDSTMEVE TDKRNMLELI LREMERSDDE FEGEDLDPEK  360
SRNLDLLTEQ MELLASEETQ LNV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-20910712120Heat shock factor protein 1
5d5u_B2e-20910721129Heat shock factor protein 1
5d5v_B2e-20910721129Heat shock factor protein 1
5d5v_D2e-20910721129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010556233.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010556232.10.0PREDICTED: heat stress transcription factor A-8
RefseqXP_010556233.10.0PREDICTED: heat stress transcription factor A-8
SwissprotQ9S7U51e-160HSFA8_ARATH; Heat stress transcription factor A-8
TrEMBLD7KW841e-164D7KW84_ARALL; Predicted protein
STRINGXP_010556232.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67970.11e-143heat shock transcription factor A8