PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010556085.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 235aa MW: 25767.3 Da PI: 7.8441 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63 | 6.5e-20 | 54 | 103 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp+ + +r++lg+f tae+Aa a+++a++k++g XP_010556085.1 54 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFETAEDAALAYDRAALKFKG 103 7********.**********94....45************************987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 4.8E-33 | 53 | 112 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.803 | 54 | 111 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-22 | 54 | 112 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.8E-13 | 54 | 103 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.52E-32 | 54 | 112 | No hit | No description |
SMART | SM00380 | 2.0E-38 | 54 | 117 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.5E-12 | 55 | 66 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.5E-12 | 77 | 93 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0071497 | Biological Process | cellular response to freezing | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 235 aa Download sequence Send to blast |
MVSVLSRVIG TPANSGGGGE GRSNPLALSD PPVKEEIDQS DQAQQGPDQP RRRHYRGVRQ 60 RPWGKWAAEI RDPKKAARVW LGTFETAEDA ALAYDRAALK FKGTKAKLNF PERVQGHTST 120 AGHVAPRTAA TATPTMVASD AHALPVGPSS YSWPATTTHE SYNQDILQYA QLLASNTDVD 180 LSYYTPSLFG QQPFSMMTSS SSSSSSLTSQ QARPPQQQEE EKNYGYRYYD DSPRD |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 7e-29 | 53 | 115 | 4 | 67 | ATERF1 |
3gcc_A | 7e-29 | 53 | 115 | 4 | 67 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator involved in the regulation of plant development and tolerance to abiotic stresses (PubMed:21069430). Acts as positive regulator of tolerance to waterlogging stress. Delays waterlogging-induced premature senescence by regulating stomatal closure and antioxidant enzyme activity. May function through ABI1-mediated abscisic acid (ABA) signaling pathway (PubMed:22661072). Involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:21069430, ECO:0000269|PubMed:21911380, ECO:0000269|PubMed:22661072}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_010556085.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress (PubMed:16133218, PubMed:21069430). Induced drought stress, jasmonate (JA), salicylic acid (SA), abscisic acid (ABA) and ethylene. Down-regulated by freezing stress (PubMed:21069430). Induced by wounding in the flowering stem (PubMed:21911380). Induced by waterlogging. {ECO:0000269|PubMed:16133218, ECO:0000269|PubMed:21069430, ECO:0000269|PubMed:21911380}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010556085.1 | 1e-174 | PREDICTED: ethylene-responsive transcription factor ERF113-like | ||||
Swissprot | Q9LYU3 | 8e-72 | EF113_ARATH; Ethylene-responsive transcription factor ERF113 | ||||
TrEMBL | A0A0D3B0X9 | 2e-70 | A0A0D3B0X9_BRAOL; Uncharacterized protein | ||||
STRING | XP_010556085.1 | 1e-173 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G13330.1 | 2e-61 | related to AP2 6l |