PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010556068.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 150aa MW: 16683.9 Da PI: 8.6707 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.8 | 6.6e-10 | 3 | 26 | 23 | 47 |
-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqky 47 +W++Ia+ ++ gRt++++k++w+++ XP_010556068.1 3 RWSKIASQLP-GRTDNEIKNHWNTH 26 4*********.************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.632 | 1 | 31 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-14 | 3 | 42 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.67E-9 | 3 | 36 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.50E-7 | 3 | 27 | No hit | No description |
Pfam | PF00249 | 1.4E-7 | 3 | 26 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 150 aa Download sequence Send to blast |
FLRWSKIASQ LPGRTDNEIK NHWNTHIKKK LRKMGIDPVT HKPLSEEEAS QPPKPQHSKK 60 KPLKKPQERK NGETQEHQER ESVRLLINHP DKERDLDQMG IGQNAGICVD EVPLMNPDEI 120 LAMPPGCINS NSCGLSSSSS SSSSCASSGL |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_010556068.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010525073.1 | 4e-77 | PREDICTED: uncharacterized protein LOC104802937 | ||||
TrEMBL | R0GVX6 | 2e-31 | R0GVX6_9BRAS; Uncharacterized protein | ||||
STRING | XP_010556068.1 | 1e-106 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM22001 | 2 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G16600.1 | 8e-33 | myb domain protein 43 |