PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010555963.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 219aa    MW: 25553.7 Da    PI: 7.1966
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010555963.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.81.4e-191360148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT eEd++l+d+v+ +G+g+W++Ia++ g++R++k+c++rw +yl
   XP_010555963.1 13 KGLWTVEEDQILIDYVRTHGKGHWNRIAKKTGLKRCGKSCRLRWMNYL 60
                     678*******************************************97 PP
2Myb_DNA-binding60.53.7e-1966111148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg +T +E++l+++++k+lG++ W++Ia++++ gRt++q+k++w+++l
   XP_010555963.1  66 RGDFTDQEEDLIIRLHKLLGNR-WSLIAKRVP-GRTDNQVKNHWNTHL 111
                      899*******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.386860IPR017930Myb domain
SuperFamilySSF466892.16E-3111107IPR009057Homeodomain-like
SMARTSM007171.2E-161262IPR001005SANT/Myb domain
PfamPF002491.0E-171360IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.9E-251467IPR009057Homeodomain-like
CDDcd001672.78E-131660No hitNo description
PROSITE profilePS5129428.42761115IPR017930Myb domain
SMARTSM007173.5E-1865113IPR001005SANT/Myb domain
PfamPF002497.2E-1866111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-2668115IPR009057Homeodomain-like
CDDcd001672.43E-1369111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010053Biological Processroot epidermal cell differentiation
GO:0010091Biological Processtrichome branching
GO:0048629Biological Processtrichome patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MKRTREEEEE YKKGLWTVEE DQILIDYVRT HGKGHWNRIA KKTGLKRCGK SCRLRWMNYL  60
SPNVNRGDFT DQEEDLIIRL HKLLGNRWSL IAKRVPGRTD NQVKNHWNTH LSKKLGIRSD  120
QSAPKNGESP SPTMIFATNS SPQRLIINNT DTRDHTADFE SVNVQNIRNK DEEDDVAVPV  180
LIDEMANFYN PNNAFWFHED YYFGLSSLAM MDFADGYCL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-29131157108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH2/EGL3/MYC146 or BHLH12/MYC1. Regulates the epidermal cell fate specification. Mediates the formation of columellae and accumulation of mucilages on seed coats. Controls the elongation of epidermal cells positively in roots but negatively in stems, leading to the promotion of primary roots elongation and repression of leaves and stems elongation, respectively. Ovoids ectopic root-hair formation, probably by inducing GL2 in roots. Controls trichome initiation and branching. {ECO:0000269|PubMed:11437443, ECO:0000269|PubMed:15361138, ECO:0000269|PubMed:15668208, ECO:0000269|PubMed:15728674}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00538DAPTransfer from AT5G40330Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010555963.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010555963.11e-166PREDICTED: transcription factor WER-like
SwissprotQ962763e-89MYB23_ARATH; Transcription factor MYB23
TrEMBLA0A087GV776e-89A0A087GV77_ARAAL; Uncharacterized protein
STRINGXP_010555963.11e-165(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40330.14e-89myb domain protein 23
Publications ? help Back to Top
  1. Khosla A, et al.
    HD-Zip Proteins GL2 and HDG11 Have Redundant Functions in Arabidopsis Trichomes, and GL2 Activates a Positive Feedback Loop via MYB23.
    Plant Cell, 2014. 26(5): p. 2184-2200
    [PMID:24824485]
  2. Yu D, et al.
    RPN1a, a subunit of the 26S proteasome, controls trichome development in Arabidopsis.
    Plant Physiol. Biochem., 2015. 88: p. 82-8
    [PMID:25676129]
  3. Lung SC, et al.
    Arabidopsis ACYL-COA-BINDING PROTEIN1 interacts with STEROL C4-METHYL OXIDASE1-2 to modulate gene expression of homeodomain-leucine zipper IV transcription factors.
    New Phytol., 2018. 218(1): p. 183-200
    [PMID:29288621]
  4. Kohanová J, et al.
    Root hair abundance impacts cadmium accumulation in Arabidopsis thaliana shoots.
    Ann. Bot., 2018. 122(5): p. 903-914
    [PMID:29394308]