PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010555962.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | TCP | ||||||||
Protein Properties | Length: 365aa MW: 38391.8 Da PI: 6.4365 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 81.1 | 2.8e-25 | 39 | 167 | 3 | 89 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg........ 88 ++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tie p + +tgt++++a+++ ++ +ss+s+ s++ XP_010555962.1 39 PAKKSTKDRHTKVDGRGRRIRMPALCAARVFQLTKELGHKSDGETIEA------PGLIPATGTGTIPANFSsLNVPIRSSGSTLSAPpsrsaplf 127 689*******************************************95......*********99999777644444444443333344445666 PP TCP 89 .......................................k 89 + XP_010555962.1 128 galglsqhhhhpydgpgsafgshappflwshlqqqqqqlD 167 6666666666777777766666554444443332222220 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.0E-27 | 43 | 208 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 15.736 | 44 | 98 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 365 aa Download sequence Send to blast |
MDIADGRNND GGGSAAAASR QQVDASLATT SSNSTAVVPA KKSTKDRHTK VDGRGRRIRM 60 PALCAARVFQ LTKELGHKSD GETIEAPGLI PATGTGTIPA NFSSLNVPIR SSGSTLSAPP 120 SRSAPLFGAL GLSQHHHHPY DGPGSAFGSH APPFLWSHLQ QQQQQLDNQN HRLTATGTDQ 180 AAETIPGSDD DNFGRKRYRS DDLSKENDDR NQNHQTEQVN KTLKNSEISP AEAAAAALWA 240 LTPASRASGN TFWMLPVTTA SVIPSALGSG QNPAVESSSA AACHRAQMWP FANPPPPECR 300 GLGMPDSNLG MLAALNAAYA RRGSNANANA NANSNAGEMN NKEPQPQQSG PDDDSGDDYS 360 NNSEE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Can specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269|PubMed:21297037}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010555962.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019057217.1 | 0.0 | PREDICTED: transcription factor TCP8-like | ||||
Swissprot | Q9C518 | 2e-93 | TCP8_ARATH; Transcription factor TCP8 | ||||
TrEMBL | A0A1J3H9R6 | 1e-108 | A0A1J3H9R6_NOCCA; Transcription factor TCP8 | ||||
STRING | XP_010555962.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10218 | 24 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G58100.1 | 5e-77 | TCP family protein |
Publications ? help Back to Top | |||
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