PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010555736.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family Nin-like
Protein Properties Length: 240aa    MW: 27237.9 Da    PI: 7.7506
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010555736.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK83.42.1e-26128178252
          RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                     ++++++++++kyF+ pi+ AAkeL+v+lTvLK++CR++GI RWPhRk+ksl
  XP_010555736.1 128 QDKLDVSEIRKYFHRPITVAAKELNVGLTVLKKRCRELGIVRWPHRKLKSL 178
                     67899********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151918.019113200IPR003035RWP-RK domain
PfamPF020422.3E-22131178IPR003035RWP-RK domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MDPNSLELLC PKADSSFDPD SLFEMFSMLP PLENLINSDD GNGDFDLSGF DDPFKDIDGN  60
IISSLCADFQ IDTNTMNQYI ATETGGSHCF SYDSPCLLTG PKDCMSSNEG DRKRTAGKKK  120
KSTKNRRQDK LDVSEIRKYF HRPITVAAKE LNVGLTVLKK RCRELGIVRW PHRKLKSLNS  180
LINNVKNLGM PVDEVANLEE HKRLIEEEPD AELTDRTKRL RQACFKANYK RRRSLVLGSF
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010555736.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010555736.11e-178PREDICTED: protein RKD4
SwissprotQ9LVU89e-62RKD4_ARATH; Protein RKD4
TrEMBLR0GE403e-73R0GE40_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_010555736.11e-178(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125852230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53040.12e-60RWP-RK domain-containing protein
Publications ? help Back to Top
  1. Azpeitia E,Davila-Velderrain J,Villarreal C,Alvarez-Buylla ER
    Gene regulatory network models for floral organ determination.
    Methods Mol. Biol., 2014. 1110: p. 441-69
    [PMID:24395275]