PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010555714.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | ERF | ||||||||
Protein Properties | Length: 380aa MW: 42114.3 Da PI: 6.1986 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.2 | 1.2e-19 | 124 | 173 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + +GVr+++ +g+W+AeIrdp + r+r++lg+f+taeeAa +++a+ +l+g XP_010555714.1 124 KLRGVRQRP-WGKWAAEIRDPEQ---RRRIWLGTFDTAEEAAMVYDNAAIQLRG 173 679******.**********743...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 1.6E-36 | 124 | 187 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.92E-33 | 124 | 180 | No hit | No description |
SuperFamily | SSF54171 | 2.22E-21 | 124 | 181 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.235 | 124 | 181 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.1E-13 | 124 | 173 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.8E-10 | 125 | 136 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.2E-29 | 125 | 180 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.8E-10 | 147 | 163 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 380 aa Download sequence Send to blast |
MRFFKKKVVK VTAMMMEMAD CTDAKCTEHR TVTTKYVKQS QEKLAGAGGV RSESRMVRVS 60 VTDLDATDSS SDDEEPLHPR RRVKRFVKEI RVEPDRIGNA VSLPVKRRRS LAAEVAGSAG 120 GGRKLRGVRQ RPWGKWAAEI RDPEQRRRIW LGTFDTAEEA AMVYDNAAIQ LRGSDAVTNF 180 ILPPTRRRDK ASELVPVVSV PEKPETNTSP SSSEPSDVPD RFPFPSSVLD FGHNQITKPA 240 SKPVTSTQLA EEPEQITEPV RSTYSAKDPE QITKPVKPEL SESPCYQPGN SISIDSDDSL 300 PLDTSYLDKL FNESSDISTF YQPISAANDF FADILNDGIT RIGGSHRLPQ FNSGGGINYF 360 DFSFKDLEDL LIMPQAVGAA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-19 | 122 | 182 | 3 | 64 | ATERF1 |
3gcc_A | 1e-19 | 122 | 182 | 3 | 64 | ATERF1 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010555714.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010555714.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor CRF4-like | ||||
STRING | XP_010555714.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2229 | 25 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27950.1 | 1e-50 | cytokinin response factor 4 |