PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010555677.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family GRAS
Protein Properties Length: 654aa    MW: 69422.3 Da    PI: 6.7794
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010555677.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS329.37.2e-1012736542374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     +++++e+A+a+s+g++  a ++Lar+ ++ +p++++ q+++a+++ AL++rl+        a +p ++se    ++l + +l++e+sP++k++++
  XP_010555677.1 273 RQTIMEIATAISEGKTDIAAEILARVTQTPNPKANSEQKVTAFMLSALRSRLNP-------AGNPAPASELYGNQHLGSIQLLYELSPCFKLGFM 360
                     6889*************************************************9.......66777777777*********************** PP

            GRAS  97 taNqaIleavege.......ervHiiDfdisqGlQWpaLlqaLasRpeg.pp.slRiTgvgspesg......skeeleetgerLakfAeelgvpf 176
                     +aN  Ilea+ g+         +H++Dfd++qG+Q+++Ll++L++R++g  p  ++iT+v+++  g       +e+l+++g+ L+++ e+lg+++
  XP_010555677.1 361 AANLSILEATLGSadavgsdGLLHVVDFDVGQGGQYVNLLHELSTRRNGkVPlVVKITAVVDKGDGsavssgGEERLNSVGDFLRQLGERLGITL 455
                     *********99987555544555*********************9985524559********77668999999********************** PP

            GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                     +fnv+ + rl +l+ e+L ++p+E laVnl+++l r++desv++e++rde+L+ vk l P+vv++veqe++ n+++Fl+r+++a  yy al++s+
  XP_010555677.1 456 RFNVVSSVRLGNLSRESLGCDPDEPLAVNLAFKLCRVPDESVCTENPRDELLRRVKALAPRVVTLVEQELNANTAPFLARVSKAGGYYGALLESV 550
                     ****8888*************************************************************************************** PP

            GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkd 364
                     e+++p+ +++r++vE+  l+r++vn+va eg +r+er+e ++kWr r+++aGF+ +pls+++a++ ++ l++ +    g++v+e++g + + W++
  XP_010555677.1 551 ESTVPSSNSDRVMVEAG-LSRKLVNAVASEGVNRIERCEVFGKWRLRMGMAGFELMPLSQTIAESLRSRLSNGNrvHPGFTVKEDNGGVSFAWMG 644
                     *****************.*************************************************99988776789***************** PP

            GRAS 365 rpLvsvSaWr 374
                     r+L ++S Wr
  XP_010555677.1 645 RTLAVASTWR 654
                     *********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098545.604246632IPR005202Transcription factor GRAS
PfamPF035142.5E-98273654IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 654 aa     Download sequence    Send to blast
MASGFSGGGG PEFFAGGGRS MNSGNNNNSN NPPIPHPSYR NQLPGIFFDQ IGNMNSGGHG  60
LAGKRTLADF QAAQFQNPAA LNALLLRSVK PRTFQNLPSP ISPLLDLTAN DINLLGGSSS  120
STQRFGLPIL PHVRSHHMSQ TPQPGLGLCG VGARMGFGSG NNTALQGVPC VDSVQNRAQP  180
SQDSEKMMSR LKELEKRLLD DDGDGQGDDD DVSVITNANS EWSETIQCLV NPVMSPSPTP  240
TPTPNPVTSS PSCSSSSSSS SPSAASPMSL CPRQTIMEIA TAISEGKTDI AAEILARVTQ  300
TPNPKANSEQ KVTAFMLSAL RSRLNPAGNP APASELYGNQ HLGSIQLLYE LSPCFKLGFM  360
AANLSILEAT LGSADAVGSD GLLHVVDFDV GQGGQYVNLL HELSTRRNGK VPLVVKITAV  420
VDKGDGSAVS SGGEERLNSV GDFLRQLGER LGITLRFNVV SSVRLGNLSR ESLGCDPDEP  480
LAVNLAFKLC RVPDESVCTE NPRDELLRRV KALAPRVVTL VEQELNANTA PFLARVSKAG  540
GYYGALLESV ESTVPSSNSD RVMVEAGLSR KLVNAVASEG VNRIERCEVF GKWRLRMGMA  600
GFELMPLSQT IAESLRSRLS NGNRVHPGFT VKEDNGGVSF AWMGRTLAVA STWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B2e-3127665491473Protein SHORT-ROOT
5b3h_B9e-3227665437419Protein SHORT-ROOT
5b3h_E9e-3227665437419Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010555677.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010555677.10.0PREDICTED: scarecrow-like protein 8 isoform X1
RefseqXP_010555679.10.0PREDICTED: scarecrow-like protein 8 isoform X2
SwissprotQ9FYR70.0SCL8_ARATH; Scarecrow-like protein 8
TrEMBLV4LHQ50.0V4LHQ5_EUTSA; Uncharacterized protein
STRINGXP_010555679.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43502856
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.10.0SCARECROW-like 8