PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010555666.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 283aa    MW: 32577.7 Da    PI: 8.1581
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010555666.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.34.6e-153986148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEd++l  ++  +G g+W++++ + g+ R++k+c++rw++yl
   XP_010555666.1 39 KGLWSPEEDDKLRSCILSHGHGCWTSVPIKAGLQRSGKSCRLRWLNYL 86
                     678*******************************************97 PP
2Myb_DNA-binding44.43.8e-1492137148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++ eE+e ++ ++  lG++ W+   ++++ gRt++++k++w+++l
   XP_010555666.1  92 RGKFSDEEEEMILILHSSLGNK-WSEMTKYLP-GRTDNEIKNHWHSHL 137
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.4263486IPR017930Myb domain
SuperFamilySSF466893.1E-2736133IPR009057Homeodomain-like
SMARTSM007173.9E-113888IPR001005SANT/Myb domain
PfamPF002492.4E-143986IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-214093IPR009057Homeodomain-like
CDDcd001675.19E-94286No hitNo description
PROSITE profilePS5129424.49987141IPR017930Myb domain
SMARTSM007172.6E-1291139IPR001005SANT/Myb domain
PfamPF002492.9E-1292137IPR001005SANT/Myb domain
CDDcd001672.84E-894137No hitNo description
Gene3DG3DSA:1.10.10.602.5E-2494141IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MNHSRSFTEF RQSLGLFIIG SKDMRKIESA ERPKQKRRKG LWSPEEDDKL RSCILSHGHG  60
CWTSVPIKAG LQRSGKSCRL RWLNYLRPGL KRGKFSDEEE EMILILHSSL GNKWSEMTKY  120
LPGRTDNEIK NHWHSHLKKR LLKSSENPET PRESISSLPR NPGTQIPKLP EASSSQEGNS  180
NRNFPRLLFS EWLSSSGPVE CSSAFEDSKN NHIPNLEDSI SNCQESDRRF CQQEMMTMMI  240
DNGNSLLHDI MLSSEFHQFE DRILQNLNGS SGDFFINGDI TYM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-23391417108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010555666.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010555666.10.0PREDICTED: transcription factor LAF1-like
SwissprotQ9M0K41e-75LAF1_ARATH; Transcription factor LAF1
TrEMBLA0A1J3CQB54e-81A0A1J3CQB5_NOCCA; Transcription factor LAF1
STRINGXP_010555666.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52260.12e-81myb domain protein 19
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]