PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010555604.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | ERF | ||||||||
Protein Properties | Length: 238aa MW: 26791.1 Da PI: 10.2938 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.8 | 6.4e-19 | 92 | 142 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp + k +r++lg++ ta +Aa+a+++a+ +l+g XP_010555604.1 92 RYRGVRRRP-WGKYAAEIRDP---NkKGARVWLGTYETAIDAARAYDRAAFRLRG 142 7********.**********9...4345*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 9.15E-23 | 92 | 151 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.7E-35 | 92 | 156 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.6E-13 | 92 | 142 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-31 | 92 | 151 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.027 | 92 | 150 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-13 | 93 | 104 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.13E-14 | 100 | 150 | No hit | No description |
PRINTS | PR00367 | 1.7E-13 | 132 | 152 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MENHQEQSAL ERIRQHLLAD FSSAESTFIP RLQTISQIQV SKPVSTLSRR KPSLSGIAVP 60 RTSTSPRSSG NNNVVMTNHH RDESEQSGEG RRYRGVRRRP WGKYAAEIRD PNKKGARVWL 120 GTYETAIDAA RAYDRAAFRL RGRKAILNFP LEAGKLCNDG SDDICIEERK RKRGEESVAS 180 TNETMTRKAV KREEQEGCPL TPSSWTEFWD RKGMGIFTVP ELSPLPSLGY SQLVAISS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-29 | 89 | 151 | 2 | 64 | ATERF1 |
3gcc_A | 2e-29 | 89 | 151 | 2 | 64 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010555604.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF270089 | 6e-56 | KF270089.1 Cleome hassleriana CRK, PMSR, and integrase-type DNA-binding superfamily protein genes, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010555604.1 | 1e-177 | PREDICTED: ethylene-responsive transcription factor ERF105-like | ||||
Swissprot | Q8VY90 | 2e-71 | EF105_ARATH; Ethylene-responsive transcription factor ERF105 | ||||
TrEMBL | T1YYW8 | 1e-83 | T1YYW8_9ROSI; Integrase-type DNA-binding superfamily protein | ||||
STRING | XP_010555604.1 | 1e-177 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7893 | 26 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51190.1 | 3e-50 | ERF family protein |
Publications ? help Back to Top | |||
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