PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010555416.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

Dof

Protein Properties

Length: 311aa MW: 33502.2 Da PI: 8.8198

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010555416.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.7	1.3e-38	31	88	3	60
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 e ++cprCdstntkfCyynnyslsqPr+fCk+CrryWt+GGalrnvPvGgg+rk+++ XP_010555416.1 31 EPPVRCPRCDSTNTKFCYYNNYSLSQPRHFCKNCRRYWTRGGALRNVPVGGGSRKHRR 88 56789**************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	1.3E-32	33	88	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	2.0E-22	34	82	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.264	34	88	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	36	72	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MMTSASKLPI REEIHRKAPP PPPPPPSKPQ EPPVRCPRCD STNTKFCYYN NYSLSQPRHF 60 CKNCRRYWTR GGALRNVPVG GGSRKHRRPL KSSPSSSILS DSYRLDSSDN ISTGGFKFCP 120 GLASHRDLGG LNSNRVMNPS SATGLAISSG GFSVSLLPEN NTHVGSLTVD ANLASSIESL 180 SSLNQDLHRK LQQQRLASLF GEHFDRNQKE TAGNGDSPAV FQNLDILPPT ASPESIVAGE 240 FPARERINVV ANGESSSTAT EWFFGNPGFL LQSFPSSSSA ATAVSGSVEN NGNGDGNMGN 300 WHGFQAWSDL P

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010555416.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010555416.1	0.0	PREDICTED: dof zinc finger protein DOF4.7-like
TrEMBL	A0A061DI28	4e-63	A0A061DI28_THECC; Dof-type zinc finger DNA-binding family protein
STRING	XP_010555416.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4950	28	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65590.1	3e-42	Dof family protein