PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010555135.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ERF
Protein Properties Length: 419aa    MW: 46937 Da    PI: 6.0684
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010555135.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.11.1e-18224274256
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae Aa a+++ + kl+ge
  XP_010555135.1 224 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEAAALAYDREAFKLRGE 274
                     59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.73E-33223283No hitNo description
PROSITE profilePS5103223.13224281IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-22224282IPR016177DNA-binding domain
SMARTSM003804.0E-39224287IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.8E-32224282IPR001471AP2/ERF domain
PfamPF008472.1E-12225274IPR001471AP2/ERF domain
PRINTSPR003671.4E-10225236IPR001471AP2/ERF domain
PRINTSPR003671.4E-10247263IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:2000070Biological Processregulation of response to water deprivation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MASENNIGKS YKSVEMSEAE KMNEMDLGEE VEFSSVKGKD VNSGSERSLQ WRPVFGEASS  60
TSQRPLKKMR SPDRHIPYYL QHSSTASQPP FSFGATSSVS PVSSSSSSSS RLAFPFVLDP  120
SIQRPQRLGY VPGTCFHPPN LPTQSREQMI SFGPQPHQNA NFPPFSSMDS FSMAQQQQYL  180
LQYWSDTLNL SPRGRLMMMS RLGQEGGHLT PLRQSLQPFS ARKLYRGVRQ RHWGKWVAEI  240
RLPRNRTRLW LGTFDTAEAA ALAYDREAFK LRGENARLNF PELFINNTDK EINATTASNS  300
SREKQPEPPP QVNPALANES RVDDLDEESG MGSREAAAND GSSMAGEMEW GEMSEAWFKA  360
IPAGWGPGSP VWDDLDTTSN LLSQSQFSSS NHNQHEPCDP HPDSPSSCPM RPFFWKDQD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-19223281160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010555135.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010555135.10.0PREDICTED: ethylene-responsive transcription factor ERF054
TrEMBLA0A061E4171e-109A0A061E417_THECC; AP2/ERF domain-containing transcription factor, putative
STRINGXP_010555135.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21412775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.12e-67ERF family protein