PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010554911.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family Trihelix
Protein Properties Length: 380aa    MW: 42752.8 Da    PI: 9.3696
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010554911.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix78.21.3e-2496203186
        trihelix   1 rWtkqevlaLiearremeerlrrgk.....................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.ts 73 
                     +Wt+ +v++Li a+ +m+++ ++++                     +kk++W++vs++m+e+gf +sp+qC++k+++lnkryk+++++ +k+ ++
  XP_010554911.1  96 KWTDTMVKLLIMAVFYMGDEAGSSEptadpakkrlsssspagggmvQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDMLGKGtAC 190
                     7*********************9988889999999*********************************************************559 PP

        trihelix  74 essstcpyfdqle 86 
                     +++++  ++d ++
  XP_010554911.1 191 RVVENQGLLDAMD 203
                     9999999999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.3E-2194228No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MLSLEAPQNP MQFKHAQMVS YAGNNGGGGG DQQHHYQMQM QPPVKPSPYL YASKPKQSSS  60
LSDEDEHGSG PGSGYNPEDG AGANGKRKFS QWQRVKWTDT MVKLLIMAVF YMGDEAGSSE  120
PTADPAKKRL SSSSPAGGGM VQKKGKWKSV SRAMMEKGFY VSPQQCEDKF NDLNKRYKRV  180
NDMLGKGTAC RVVENQGLLD AMDIPLKLKE EVKKLLHSKH LFFREMCAYH NSCGHLNADP  240
PQTQMQTQTQ SCFHPAAAAA AAAEESEPET AEDSESGDES SEEVGRKRRK RASESMAVTV  300
LMEEAGKVAM EEKKEWMKMK MVEVEMEKQR LKWIRFKGKK EREMEKTTLQ IQRRRLENER  360
MLLLLRRMGM ELGLQSGRIG
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010554911.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010554911.10.0PREDICTED: uncharacterized protein LOC104824502
TrEMBLV4LF261e-125V4LF26_EUTSA; Uncharacterized protein
STRINGXP_010554911.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67622741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.11e-78sequence-specific DNA binding transcription factors