PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010554873.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ERF
Protein Properties Length: 198aa    MW: 21731.4 Da    PI: 6.9153
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010554873.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.72.8e-18756355
             AP2  3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                    y+GVr ++++g+Wv+eIr+p+    +  r++lg+f t+e+Aa a++ a+++l+g
  XP_010554873.1  7 YRGVRKRRNSGKWVSEIREPK----KpNRIWLGTFSTPEMAAIAYDVAALALKG 56
                    9******************94....468***********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.92E-20665IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.3E-29666IPR001471AP2/ERF domain
PROSITE profilePS5103222.866664IPR001471AP2/ERF domain
SMARTSM003806.4E-32670IPR001471AP2/ERF domain
PRINTSPR003676.5E-5718IPR001471AP2/ERF domain
CDDcd000186.04E-30765No hitNo description
PfamPF008472.4E-11756IPR001471AP2/ERF domain
PRINTSPR003676.5E-53046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MARHPMYRGV RKRRNSGKWV SEIREPKKPN RIWLGTFSTP EMAAIAYDVA ALALKGRDAE  60
LNFPDMAASL PVPVSASPGD IQAAAASAAA ALGAANDAMK NRETSNNNTR VHHHHHHHHH  120
QEDNASMMMI NGDYHHYHSN SVLNSGFMDE DLIFDMPNVL VHMAEGMLLS PPHLHAHGGA  180
SGGEDGFLGA DDHLWKFP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-132641072Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010554873.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010554873.11e-144PREDICTED: ethylene-responsive transcription factor ERF024-like
SwissprotQ9SJR02e-62ERF24_ARATH; Ethylene-responsive transcription factor ERF024
TrEMBLV4LNX42e-70V4LNX4_EUTSA; Uncharacterized protein
STRINGXP_010554873.11e-144(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64242546
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36450.11e-53ERF family protein