PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010554771.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | bHLH | ||||||||
Protein Properties | Length: 243aa MW: 26898.8 Da PI: 8.1312 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 48.6 | 1.5e-15 | 57 | 108 | 1 | 54 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++++hn+ Er RR++iN f+ Lr+llP+ + skKls +++ +A +YI +L XP_010554771.1 57 KKMNHNASERDRRKKINALFSSLRSLLPPsD---CSKKLSIPATVSHALKYIPEL 108 689**************************65...7888**************876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 8.37E-17 | 47 | 122 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.275 | 56 | 108 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.83E-13 | 57 | 113 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 6.0E-14 | 57 | 124 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.1E-12 | 57 | 108 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.6E-10 | 62 | 114 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010106 | Biological Process | cellular response to iron ion starvation | ||||
GO:0055072 | Biological Process | iron ion homeostasis | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MCALVPPLFA DFGWPSEEQI YGGGYINAGE FLEFPASLGL SNSSEGDGKS NGRAVAKKMN 60 HNASERDRRK KINALFSSLR SLLPPSDCSK KLSIPATVSH ALKYIPELVE QIKKLLQKKE 120 ELMVRLSGQR DLLCENDKDD EKKSEPTKAT GFGSIVTVAR INETEAVVQI SSLKAHKCSF 180 PNVLRGLEED GFVIIDASSS LSRGDRLFYT VHFQAEAHHK LSCGDLRDKL LSLICMRDVW 240 KSV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010554771.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by OBP3, auxin and salicylic acid (SA). Repressed by jasmonic acid (JA), UV LIGHT, and heat treatments. Up regulated by iron deficiency in roots and leaves, as well as by nickel, high zinc or high copper treatments. Repressed by high iron, low copper and low zinc treatments. {ECO:0000269|PubMed:12679534, ECO:0000269|PubMed:12887587, ECO:0000269|PubMed:17516080}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010554771.1 | 1e-180 | PREDICTED: transcription factor ORG2 | ||||
Swissprot | Q9M1K1 | 2e-81 | ORG2_ARATH; Transcription factor ORG2 | ||||
TrEMBL | V4L261 | 4e-85 | V4L261_EUTSA; Uncharacterized protein | ||||
STRING | XP_010554771.1 | 1e-180 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM482 | 28 | 153 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56970.1 | 4e-64 | bHLH family protein |