PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010554668.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C3H
Protein Properties Length: 603aa    MW: 65985.3 Da    PI: 8.2291
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010554668.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.45e-08255275526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +C+ f++ G C+ Gd+C +aHg
  XP_010554668.1 255 PCPEFRK-GSCPKGDSCEYAHG 275
                     8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.202.6E-1417168IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484033.89E-1327162IPR020683Ankyrin repeat-containing domain
SMARTSM002482.3E-46191IPR002110Ankyrin repeat
PROSITE profilePS5029712.40861162IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500888.956185IPR002110Ankyrin repeat
PfamPF136374.0E-762120No hitNo description
CDDcd002049.45E-1363159No hitNo description
SMARTSM002481396129IPR002110Ankyrin repeat
SMARTSM003561.3E-4250276IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.239250277IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.1E-6255277IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-5255275IPR000571Zinc finger, CCCH-type
SMARTSM0035637285308IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.869285309IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 603 aa     Download sequence    Send to blast
MEGEFRRQKE ETIRCSSSLL EFAACDDLAA FRREVESKGL DVDEPSFWYC RRVGSKKMGF  60
EERTPLMVAA MYGSTEVLKY IISTGKANVN RVCGEERVTA LHCAVAGCAW SVVEVIKLLL  120
DASALSFSVD ANGNKPVDLI ARFSRFVSAR NRKAVELLLN GGLGSASLVD HVLNQEKDGG  180
EHKGLANHTT KYPADASLPD INEGIYGTDE FRMYSFKVKP CSRAYSHDWT ECPFVHPGEN  240
ARRRDLRKYP YTCVPCPEFR KGSCPKGDSC EYAHGIFESW LHPAQYRTRL CKDETGCARK  300
VCFFAHKPEE VRPVNASTGS AMVSPRSNCS QSPVSSTEMS VMSPLTLSSS ALSYSSSVSS  360
SPRNGGLWQN RVNNLNVNVT PPALQLSGSR LKSALNARDL DMEMEMRLLG LDNQNGQMGF  420
DSSSLGPPLQ SLSSSSTPSQ LQSPSQNMNY YPYSSSPARK AQKPAPGFES SSAAVAAAVM  480
NSRSSAFVKR SLSFKPSSAA AATAPSSSDL SGWRSLSGKL EWGMTQGDEL NKLRRSISFG  540
IRDYRDEPDV SWVNSLVKDS APEGGAFGMN GRVGHAGNAA VAAREKLRWW AEQMYIEQEQ  600
IVA
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010554668.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010554668.10.0PREDICTED: zinc finger CCCH domain-containing protein 29-like
SwissprotQ9XEE60.0C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLR0HRW60.0R0HRW6_9BRAS; Uncharacterized protein
STRINGXP_010554668.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87726107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.20.0C3H family protein