PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010554600.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family Dof
Protein Properties Length: 372aa    MW: 40546.6 Da    PI: 8.7536
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010554600.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof123.57e-3982141362
          zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                     e+alkcprCdstntkfCy+nnysl+qPr+fCk+CrryWt+GGalrnvPvGgg r+nk+s+
  XP_010554600.1  82 EAALKCPRCDSTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGYRRNKRSK 141
                     6789*****************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-3665139IPR003851Zinc finger, Dof-type
PfamPF027011.9E-3284139IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.3285139IPR003851Zinc finger, Dof-type
PROSITE patternPS01361087123IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MVFSSLPVYQ FDPPNWQQHG NQQPFGFTND RHNPNHFSPP VPSAAAPRPP QVVDGGAATA  60
GQTVRPSSMV ERARLAKIPL PEAALKCPRC DSTNTKFCYF NNYSLTQPRH FCKTCRRYWT  120
RGGALRNVPV GGGYRRNKRS KSNGGSGMRS KSKVMVASDH HHHHQQEAST SSSSAFSRHT  180
SYSNPSKILN IGQTSGLSSN LPFLSPLQGL GDYCTSNVEL GLGGIQLNSA ITGSSSGGAL  240
DQWRPSLQQI QQFPFLINTP GLDQSSSVLY PLLEGNKDIN QDEEETGNYL NQTRYKPLVD  300
MTAAAGDTQS DNVTAEENDH KGVNNLSRNL LANININSAN DQYPSSWGGS NNSWNTDLLG  360
FASNNSASHY LS
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements. {ECO:0000269|PubMed:12887587}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00407DAPTransfer from AT3G55370Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010554600.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin and salicylic acid (SA). Repressed by jasmonic acid (JA). {ECO:0000269|PubMed:10758484, ECO:0000269|PubMed:12887587}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010554600.10.0PREDICTED: dof zinc finger protein DOF3.6-like
SwissprotQ9M2U11e-115DOF36_ARATH; Dof zinc finger protein DOF3.6
TrEMBLD7LV361e-130D7LV36_ARALL; Obf-binding protein 3
STRINGXP_010554600.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17132886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55370.21e-106OBF-binding protein 3