PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010554546.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ARF
Protein Properties Length: 682aa    MW: 74935.6 Da    PI: 6.5086
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010554546.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.21.7e-24125226199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f k+lt+sd+++ g +++p+ +ae++        +++ +  t+  +d +g +W++++iyr++++r++lt+GW++Fv++++L +gD++vF+  + +
  XP_010554546.1 125 FAKTLTQSDANNGGGFSVPRYCAETIfprldynAEPPVQ--TILAKDVHGDVWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFM--RAE 215
                     89****************************985444444..8999*********************************************..448 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     ++ l+v+++r+
  XP_010554546.1 216 NGDLCVGIRRA 226
                     8999****997 PP
2Auxin_resp116.81.8e-38283366183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                     aa+ a ++++F+vvY+PrastseF+vk+++v++a++++++ GmRfkmafetedss++++ +Gtv++vs +dpvrWp+S+Wr+L+
  XP_010554546.1 283 AATLAISGKPFDVVYYPRASTSEFCVKLSEVRAAMQIPWCSGMRFKMAFETEDSSRISWfMGTVSSVSVSDPVRWPDSPWRLLQ 366
                     67788999**************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-38118232IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.85E-30120228IPR015300DNA-binding pseudobarrel domain
CDDcd100174.05E-22123225No hitNo description
PROSITE profilePS5086313.352125227IPR003340B3 DNA binding domain
PfamPF023621.8E-22125226IPR003340B3 DNA binding domain
SMARTSM010197.1E-23125227IPR003340B3 DNA binding domain
PfamPF065074.5E-33283366IPR010525Auxin response factor
PROSITE profilePS5174514.769596676IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 682 aa     Download sequence    Send to blast
MINVMNSLKD PIKGSGEKCL DPQLWHACAG GMVRMPHTNS KVAYFPQGHA ENAYDRVDFG  60
TLPIPAMVLC RVLAIKYMAD AESDEVFAKI RLMPLKGDGF DHEDCNGDGG YGNVFEGNNE  120
KTPSFAKTLT QSDANNGGGF SVPRYCAETI FPRLDYNAEP PVQTILAKDV HGDVWKFRHI  180
YRGTPRRHLL TTGWSNFVNQ KKLVAGDSIV FMRAENGDLC VGIRRAKRGG IGNGPEYSSG  240
WNPIGGSCVY ASLLREDEGS NLKRSCSPFD IKGKVTSESV LQAATLAISG KPFDVVYYPR  300
ASTSEFCVKL SEVRAAMQIP WCSGMRFKMA FETEDSSRIS WFMGTVSSVS VSDPVRWPDS  360
PWRLLQVAWD EPDLLQNVKR VNPWLVELVS NIPSIPFSSY SPSRKKMRFP QNPDYSPINS  420
ISIPSFSSNH LGLGNPLGLG CVPDNVPVGL QGARHAQYEL SSSDLHHLNR LPPGFFPICF  480
QGLDRSVPSL GFLRHGNPLR NAENDEKGSC FLTMGSPKHI LDEDTESKKP HIVLFGKLIL  540
PEQPKPENES ADTNTNLEKS PISSGGSSQN SGGREKSLSE EGSPCKDNDD VGGLETGHCK  600
VFMESDNVGR TLDISVLGSY EELNKKLSDM FGIENPEILS SVLYCDASGA IKYAGNEPFS  660
HFSKTARRLT ILTDQGSENV VR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A3e-80138733388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010554546.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010554545.10.0PREDICTED: auxin response factor 16-like
RefseqXP_010554546.10.0PREDICTED: auxin response factor 16-like
SwissprotQ93YR90.0ARFP_ARATH; Auxin response factor 16
TrEMBLV4MCQ20.0V4MCQ2_EUTSA; Auxin response factor
STRINGXP_010554545.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Yang ZB, et al.
    TAA1-regulated local auxin biosynthesis in the root-apex transition zone mediates the aluminum-induced inhibition of root growth in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2889-904
    [PMID:25052716]
  2. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]
  3. Zhang GZ, et al.
    Ectopic expression of UGT75D1, a glycosyltransferase preferring indole-3-butyric acid, modulates cotyledon development and stress tolerance in seed germination of Arabidopsis thaliana.
    Plant Mol. Biol., 2016. 90(1-2): p. 77-93
    [PMID:26496910]
  4. Ye Y, et al.
    Germostatin resistance locus 1 encodes a PHD finger protein involved in auxin-mediated seed dormancy and germination.
    Plant J., 2016. 85(1): p. 3-15
    [PMID:26611158]
  5. Liu Z, et al.
    Repression of callus initiation by the miRNA-directed interaction of auxin-cytokinin in Arabidopsis thaliana.
    Plant J., 2016. 87(4): p. 391-402
    [PMID:27189514]
  6. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  7. Wójcik AM,Nodine MD,Gaj MD
    miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 2024
    [PMID:29321785]
  8. Lin JS, et al.
    MicroRNA160 Modulates Plant Development and Heat Shock Protein Gene Expression to Mediate Heat Tolerance in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 68
    [PMID:29449855]