PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010554485.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | SRS | ||||||||
Protein Properties | Length: 199aa MW: 21421.1 Da PI: 9.5858 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 183.8 | 7e-57 | 35 | 181 | 4 | 152 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel.kskkqsalsstklssaesk 97 ++ C dCGn+akk+Ca+ RCRtCCksrg+dCathvkstWvpa++rr+r+ + a a s + s sk++r++ ++++++a + l++++s+ XP_010554485.1 35 EEKVCGDCGNRAKKECAFGRCRTCCKSRGYDCATHVKSTWVPASQRRDRKFTVAGAVSGSGPSC--PGSKKQRTEvSEQNNAAKAPLGLQTSSSH 127 6789*********************************************999999887776654..44444444413444555555556666555 PP DUF702 98 keletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGl 152 + ++ + lP +v+++avfr++rv+++ +ge+e+aYq++v+i+GhvfkG+Ly++G XP_010554485.1 128 QGFK-EALPGKVQAPAVFRRIRVTAITNGEAEVAYQATVTISGHVFKGFLYNYGG 181 5555.55*********************************************984 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 7.0E-52 | 37 | 180 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 4.3E-26 | 38 | 80 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 1.9E-26 | 134 | 180 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MLRFRNLMLI SSPPPQPPST DSLSENLEND LSGAEEKVCG DCGNRAKKEC AFGRCRTCCK 60 SRGYDCATHV KSTWVPASQR RDRKFTVAGA VSGSGPSCPG SKKQRTEVSE QNNAAKAPLG 120 LQTSSSHQGF KEALPGKVQA PAVFRRIRVT AITNGEAEVA YQATVTISGH VFKGFLYNYG 180 GVDQNNPLPR ASSKLPTEN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM) (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010554485.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010554483.1 | 1e-147 | PREDICTED: protein SHI RELATED SEQUENCE 6 | ||||
Refseq | XP_010554484.1 | 1e-147 | PREDICTED: protein SHI RELATED SEQUENCE 6 | ||||
Refseq | XP_010554486.1 | 1e-147 | PREDICTED: protein SHI RELATED SEQUENCE 6 | ||||
Swissprot | Q9M2U4 | 5e-57 | SRS6_ARATH; Protein SHI RELATED SEQUENCE 6 | ||||
TrEMBL | A0A0D2VQ14 | 1e-55 | A0A0D2VQ14_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A1U8KFQ4 | 1e-55 | A0A1U8KFQ4_GOSHI; protein SHI RELATED SEQUENCE 6-like | ||||
STRING | XP_010554483.1 | 1e-147 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54430.1 | 3e-55 | SHI-related sequence 6 |
Publications ? help Back to Top | |||
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