PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010554371.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 278aa MW: 30898.3 Da PI: 10.0847 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 341 | 3e-104 | 1 | 278 | 1 | 301 |
GAGA_bind 1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki....rernlalsekkaavaerd.........maflqrdkalaernkalverdnkll 82 mdddg+ rn+gyyepa ++k +lglqlmssi er++k+ r+ nl ++++++++++rd m++ ++++ +++k++ XP_010554371.1 1 MDDDGF--RNWGYYEPA-NFKGHLGLQLMSSI-ERNTKPflpgRDPNL-MIGPNGSYHPRDcvvsetpipMNY----GWINQ-------QKDKFF 79 99**99..9********.**************.9**************.************999999999999....89999.......899*** PP GAGA_bind 83 alllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpke.kkakkkkkksekskk 176 ++l+v+ p++++vl++t+ + s+q l+++ r ee + p +e+ +++k++k ++++pk +k kk++k +k+ XP_010554371.1 80 NMLPVNP------PSYSNVLPETSGAPSMQI-----LHPPVSSSRVEE--DPVPGQEEIPQTKKRKPAG---SGSNPKGhSKPKKPRK----PKD 154 ****765......899*************99.....333333322222..3334344444444444444...3444443033333333....434 PP GAGA_bind 177 kvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLek 271 + +e+ +r+k kks d+v+ngvs+D+s+lPvPvC+CtG+++qCY+WG+GGWqSaCCtt+iS+yPLP+stkrrgaRi+grKmSqgafkk+Lek XP_010554371.1 155 NDGNEHI-QRVKPAKKSFDVVINGVSMDISSLPVPVCTCTGTPQQCYRWGCGGWQSACCTTNISMYPLPMSTKRRGARISGRKMSQGAFKKVLEK 248 4444444.79************************************************************************************* PP GAGA_bind 272 LaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 LaaeG+++s p+DLk+hWA+HGtnkfvtir XP_010554371.1 249 LAAEGFNFSSPIDLKSHWARHGTNKFVTIR 278 *****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF06217 | 1.7E-99 | 1 | 278 | IPR010409 | GAGA-binding transcriptional activator |
SMART | SM01226 | 5.6E-166 | 1 | 278 | IPR010409 | GAGA-binding transcriptional activator |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0050793 | Biological Process | regulation of developmental process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 278 aa Download sequence Send to blast |
MDDDGFRNWG YYEPANFKGH LGLQLMSSIE RNTKPFLPGR DPNLMIGPNG SYHPRDCVVS 60 ETPIPMNYGW INQQKDKFFN MLPVNPPSYS NVLPETSGAP SMQILHPPVS SSRVEEDPVP 120 GQEEIPQTKK RKPAGSGSNP KGHSKPKKPR KPKDNDGNEH IQRVKPAKKS FDVVINGVSM 180 DISSLPVPVC TCTGTPQQCY RWGCGGWQSA CCTTNISMYP LPMSTKRRGA RISGRKMSQG 240 AFKKVLEKLA AEGFNFSSPI DLKSHWARHG TNKFVTIR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010554371.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010554370.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE2-like | ||||
Refseq | XP_010554371.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE2-like | ||||
Swissprot | Q9LDE2 | 1e-140 | BPC2_ARATH; Protein BASIC PENTACYSTEINE2 | ||||
TrEMBL | A0A1J3CP14 | 1e-144 | A0A1J3CP14_NOCCA; Protein BASIC PENTACYSTEINE2 | ||||
TrEMBL | A0A1J3GH63 | 1e-144 | A0A1J3GH63_NOCCA; Protein BASIC PENTACYSTEINE2 | ||||
STRING | XP_010554370.1 | 0.0 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14685.3 | 1e-142 | basic pentacysteine 2 |
Publications ? help Back to Top | |||
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