PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010554362.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
|
||||||||
Family | BBR-BPC | ||||||||
Protein Properties | Length: 278aa MW: 30673.9 Da PI: 10.0984 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 334.2 | 3.6e-102 | 1 | 278 | 1 | 301 |
GAGA_bind 1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki....rernlalsekkaavaerd.........maflqrdkalaernkalverdnkll 82 mdddg+ rn+gyyepa ++k +lglqlmssi er++k+ r+ n+ + ++++++++rd m++ ++++ +++ ++ XP_010554362.1 1 MDDDGF--RNWGYYEPA-NFKGDLGLQLMSSI-ERNTKPflpgRDPNV-MVGPNGSYHPRDcpvpespipMNY----GWINQ-------QKDYFF 79 99**99..9********.**************.9**************.************999999999999....99999.......88999* PP GAGA_bind 83 alllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkk 177 ++l+v+ p++++vl++t+ + s+q l++ ++ +ea p+ ++e+ ++kk+k ++++ k kk +k+k+ + XP_010554362.1 80 NMLPVNP------PNYSNVLPETSGAPSMQI-----LRPAVS----SSRVEASPVPGEEEVPQNKKRKPGGASKGGSKPKKPRKPKND---N--G 154 ***9765......99************9999.....333333....344555666665555555555555566666666666666662...2..2 PP GAGA_bind 178 vkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekL 272 ++++++ +r+k kks+d+v+ngvs+D+s+l vPvC+CtG+++qCY+WG+GGWqSaCCtt+iS+yPLP+stkrrgaRi+grKmSqgafkk+LekL XP_010554362.1 155 NEHNGNVQRVKPAKKSMDVVINGVSMDISGLSVPVCTCTGTPQQCYRWGCGGWQSACCTTNISMYPLPMSTKRRGARISGRKMSQGAFKKVLEKL 249 2233333799************************************************************************************* PP GAGA_bind 273 aaeGydlsnpvDLkdhWAkHGtnkfvtir 301 aaeGy+++np+DLk+hWA+HGtnkfvtir XP_010554362.1 250 AAEGYNFANPIDLKSHWARHGTNKFVTIR 278 ****************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01226 | 3.7E-164 | 1 | 278 | IPR010409 | GAGA-binding transcriptional activator |
Pfam | PF06217 | 9.6E-98 | 1 | 278 | IPR010409 | GAGA-binding transcriptional activator |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 278 aa Download sequence Send to blast |
MDDDGFRNWG YYEPANFKGD LGLQLMSSIE RNTKPFLPGR DPNVMVGPNG SYHPRDCPVP 60 ESPIPMNYGW INQQKDYFFN MLPVNPPNYS NVLPETSGAP SMQILRPAVS SSRVEASPVP 120 GEEEVPQNKK RKPGGASKGG SKPKKPRKPK NDNGNEHNGN VQRVKPAKKS MDVVINGVSM 180 DISGLSVPVC TCTGTPQQCY RWGCGGWQSA CCTTNISMYP LPMSTKRRGA RISGRKMSQG 240 AFKKVLEKLA AEGYNFANPI DLKSHWARHG TNKFVTIR |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_010554362.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010554354.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE2-like isoform X1 | ||||
Refseq | XP_010554362.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE2-like isoform X2 | ||||
Swissprot | Q9LDE2 | 1e-137 | BPC2_ARATH; Protein BASIC PENTACYSTEINE2 | ||||
TrEMBL | A0A1J3GH63 | 1e-146 | A0A1J3GH63_NOCCA; Protein BASIC PENTACYSTEINE2 | ||||
STRING | XP_010554354.1 | 0.0 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G14685.3 | 1e-136 | basic pentacysteine 2 |
Publications ? help Back to Top | |||
---|---|---|---|
|